Wall clock time and date at job start Mon Mar 30 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 H 1.09001 * 109.47324 * 305.93036 * 3 2 1 5 5 C 1.50705 * 109.47312 * 185.92944 * 3 2 1 6 6 H 1.07994 * 119.99968 * 243.19144 * 5 3 2 7 7 C 1.37881 * 119.99785 * 63.19570 * 5 3 2 8 8 N 1.31510 * 119.99982 * 193.67468 * 7 5 3 9 9 Si 1.86797 * 119.99864 * 13.67196 * 7 5 3 10 10 H 1.48502 * 109.47344 * 91.17133 * 9 7 5 11 11 H 1.48500 * 109.47082 * 211.16810 * 9 7 5 12 12 H 1.48499 * 109.47536 * 331.16627 * 9 7 5 13 13 N 1.46907 * 109.47315 * 65.93119 * 3 2 1 14 14 N 1.36593 * 110.99907 * 269.25837 * 13 3 2 15 15 C 1.36350 * 125.63719 * 354.30306 * 14 13 3 16 16 C 1.34849 * 108.21678 * 180.02562 * 15 14 13 17 17 C 1.40887 * 107.41843 * 0.02562 * 16 15 14 18 18 C 1.34852 * 107.41895 * 359.97438 * 17 16 15 19 19 H 1.09002 * 109.46949 * 182.41632 * 1 2 3 20 20 H 1.08992 * 109.46842 * 302.41760 * 1 2 3 21 21 H 1.08996 * 109.46969 * 62.41833 * 1 2 3 22 22 H 1.09001 * 109.47710 * 240.00070 * 2 1 3 23 23 H 1.08998 * 109.47614 * 119.99892 * 2 1 3 24 24 H 0.96996 * 120.00021 * 180.02562 * 8 7 5 25 25 H 1.00896 * 110.99357 * 33.20694 * 13 3 2 26 26 H 1.08002 * 125.88574 * 0.03414 * 15 14 13 27 27 H 1.08005 * 126.28712 * 180.26784 * 16 15 14 28 28 H 1.08007 * 126.29050 * 179.97438 * 17 16 15 29 29 H 1.07994 * 125.88800 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5926 1.9861 -0.8321 5 6 3.5399 1.4451 -0.1468 6 1 4.1593 1.8388 0.6454 7 6 4.1213 0.9448 -1.2926 8 7 5.4123 0.6958 -1.3201 9 14 3.0751 0.6206 -2.8057 10 1 3.0630 1.8299 -3.6676 11 1 3.6432 -0.5224 -3.5647 12 1 1.6874 0.2964 -2.3881 13 7 1.6707 2.0925 1.2646 14 7 0.4573 2.7111 1.1609 15 6 -0.2776 2.8323 0.0188 16 6 -1.4097 3.5024 0.3152 17 6 -1.3721 3.8065 1.6903 18 6 -0.2187 3.3102 2.1821 19 1 -0.3633 -1.0268 0.0433 20 1 -0.3633 0.5509 0.8675 21 1 -0.3633 0.4758 -0.9108 22 1 1.8935 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 5.8214 0.3442 -2.1262 25 1 1.6752 1.4306 2.0261 26 1 -0.0008 2.4563 -0.9550 27 1 -2.2016 3.7556 -0.3742 28 1 -2.1281 4.3393 2.2481 29 1 0.1126 3.3765 3.2078 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085830449.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:57 Heat of formation + Delta-G solvation = 69.401968 kcal Electronic energy + Delta-G solvation = -12462.213789 eV Core-core repulsion = 10387.070935 eV Total energy + Delta-G solvation = -2075.142854 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.34733 -38.11014 -34.76135 -33.56343 -30.25038 -29.67535 -27.99240 -24.52404 -22.87408 -21.43514 -20.23501 -19.72068 -18.34972 -16.91525 -16.68642 -15.74397 -14.99188 -14.87561 -14.53099 -14.15660 -13.82733 -13.59694 -13.13827 -12.91798 -12.79874 -12.67002 -12.57832 -11.85918 -11.55195 -11.36188 -10.72469 -10.69184 -8.99507 -8.74453 -8.38702 -6.40967 1.29005 1.34480 1.40574 1.50543 1.85662 2.22275 2.26835 2.93676 3.54789 4.04774 4.15045 4.28085 4.41734 4.53937 4.58402 4.68570 4.86290 4.96104 5.01038 5.26433 5.30441 5.39983 5.46673 5.51466 5.77075 6.16865 6.23635 6.56655 6.63573 7.21400 7.25027 8.77648 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.012219 C = 0.011532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.107211 B = 2290.914191 C = 2427.526672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.180 3.820 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.039 0.961 7 C 0.026 3.974 8 N -0.935 5.935 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.220 1.220 13 N -0.449 5.449 14 N -0.287 5.287 15 C -0.052 4.052 16 C -0.209 4.209 17 C -0.208 4.208 18 C -0.029 4.029 19 H 0.065 0.935 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.269 0.731 25 H 0.352 0.648 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.160 0.840 29 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 0.659 2.461 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.195 4.195 3 C 0.072 3.928 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.057 0.943 7 C -0.174 4.174 8 N -0.574 5.574 9 Si 0.745 3.255 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.143 1.143 13 N -0.171 5.171 14 N -0.046 5.046 15 C -0.185 4.185 16 C -0.234 4.234 17 C -0.234 4.234 18 C -0.161 4.161 19 H 0.084 0.916 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.173 0.827 26 H 0.170 0.830 27 H 0.171 0.829 28 H 0.178 0.822 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -12.899 0.972 2.287 13.136 hybrid contribution 0.099 -0.981 -0.715 1.218 sum -12.799 -0.009 1.572 12.895 Atomic orbital electron populations 1.21981 0.94924 1.02072 1.01624 1.22623 0.95846 0.98619 1.02394 1.19920 0.95122 0.90539 0.87238 0.93391 1.20843 0.90053 1.41120 1.03860 0.94274 1.25658 0.96006 0.94106 1.01580 1.70052 1.12995 1.44750 1.29589 0.86308 0.81780 0.78192 0.79227 1.20281 1.20726 1.14257 1.62427 1.08470 1.36712 1.09494 1.43685 1.11623 1.40138 1.09187 1.22030 0.94341 1.10093 0.92026 1.21010 0.98646 1.06615 0.97172 1.21046 0.98814 1.08365 0.95145 1.22120 0.94635 1.05330 0.94051 0.91551 0.93189 0.92557 0.91899 0.92228 0.92140 0.82678 0.82999 0.82928 0.82228 0.80475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 8.41 71.98 0.61 -4.17 15 2 C -0.16 -6.09 4.56 30.59 0.14 -5.95 15 3 C 0.18 8.02 1.67 44.17 0.07 8.10 15 4 H 0.05 2.18 4.29 -2.39 -0.01 2.17 15 5 C -0.52 -28.86 9.31 25.60 0.24 -28.62 15 6 H 0.04 2.46 8.06 -2.91 -0.02 2.44 15 7 C 0.03 1.45 5.35 84.66 0.45 1.90 15 8 N -0.94 -56.66 13.96 21.45 0.30 -56.36 15 9 Si 0.92 41.25 25.75 68.60 1.77 43.02 15 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 12 H -0.22 -8.66 5.31 99.48 0.53 -8.14 15 13 N -0.45 -18.22 6.82 -171.78 -1.17 -19.39 15 14 N -0.29 -10.35 2.67 -194.56 -0.52 -10.87 15 15 C -0.05 -1.82 7.66 83.21 0.64 -1.18 15 16 C -0.21 -6.24 10.86 22.14 0.24 -6.00 15 17 C -0.21 -5.82 10.86 22.14 0.24 -5.58 15 18 C -0.03 -0.90 11.67 83.21 0.97 0.08 15 19 H 0.07 1.85 8.14 -2.39 -0.02 1.83 15 20 H 0.05 1.61 6.07 -2.39 -0.01 1.59 15 21 H 0.06 1.77 6.80 -2.39 -0.02 1.75 15 22 H 0.06 2.57 4.57 -2.39 -0.01 2.56 15 23 H 0.06 2.30 8.00 -2.39 -0.02 2.28 15 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 25 H 0.35 12.96 8.49 -210.56 -1.79 11.17 15 26 H 0.15 5.36 5.32 -2.91 -0.02 5.34 15 27 H 0.15 3.75 8.06 -2.91 -0.02 3.73 15 28 H 0.16 3.46 8.06 -2.91 -0.02 3.44 15 29 H 0.18 4.47 8.06 -2.91 -0.02 4.45 15 Total: -1.00 -62.53 231.28 3.16 -59.37 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.82 Total: 25.64 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 3.60 Total: -41.42 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -1.39 Total: -86.61 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.77 Total: 43.02 kcal Total: -62.53 3.16 -59.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085830449.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.777 kcal (2) G-P(sol) polarization free energy of solvation -62.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds