Wall clock time and date at job start Mon Mar 30 2020 01:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34848 * 125.89343 * 2 1 4 4 C 1.40897 * 107.41629 * 179.97438 * 3 2 1 5 5 C 1.34848 * 107.41918 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.89200 * 180.02562 * 5 4 3 7 7 N 1.36345 * 125.88743 * 179.69907 * 2 1 3 8 8 N 1.36599 * 125.63667 * 0.03274 * 7 2 1 9 9 C 1.46900 * 110.99933 * 265.12420 * 8 7 2 10 10 C 1.50696 * 109.47183 * 174.89225 * 9 8 7 11 11 H 1.07992 * 120.00169 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00092 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99486 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00184 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46900 * 359.97438 * 14 12 10 16 16 H 1.48511 * 109.47136 * 119.99610 * 14 12 10 17 17 H 1.48497 * 109.47341 * 239.99842 * 14 12 10 18 18 H 1.08996 * 109.47412 * 90.01802 * 1 2 3 19 19 H 1.08998 * 109.47348 * 210.02373 * 1 2 3 20 20 H 1.08998 * 109.46819 * 330.01561 * 1 2 3 21 21 H 1.07995 * 126.29346 * 359.97438 * 3 2 1 22 22 H 1.08003 * 126.28475 * 180.02562 * 4 3 2 23 23 H 1.08997 * 109.47684 * 95.11737 * 6 5 4 24 24 H 1.08996 * 109.47273 * 215.12638 * 6 5 4 25 25 H 1.09006 * 109.46926 * 335.12204 * 6 5 4 26 26 H 1.00902 * 111.00076 * 141.17313 * 8 7 2 27 27 H 1.09000 * 109.46999 * 294.89394 * 9 8 7 28 28 H 1.09000 * 109.47274 * 54.88640 * 9 8 7 29 29 H 0.97001 * 119.99328 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0924 0.0000 4 6 3.6339 0.6459 0.0006 5 6 3.6090 -0.7024 0.0004 6 6 4.8133 -1.6082 0.0014 7 7 2.3062 -1.1046 0.0058 8 7 1.8733 -2.4002 0.0120 9 6 1.8164 -2.9297 1.3810 10 6 1.2181 -4.3126 1.3603 11 1 0.9104 -4.7539 0.4239 12 6 1.0624 -5.0142 2.5371 13 7 1.4367 -4.4765 3.6775 14 14 0.3201 -6.7281 2.5115 15 1 -0.0159 -7.1011 1.1139 16 1 1.2990 -7.6998 3.0620 17 1 -0.9133 -6.7458 3.3382 18 1 -0.3634 -0.0003 -1.0276 19 1 -0.3634 -0.8897 0.5142 20 1 -0.3633 0.8901 0.5136 21 1 1.9672 2.1206 -0.0004 22 1 4.5160 1.2690 0.0011 23 1 5.0476 -1.9001 1.0251 24 1 4.5990 -2.4982 -0.5902 25 1 5.6645 -1.0815 -0.4301 26 1 2.4550 -2.9786 -0.5755 27 1 2.8237 -2.9758 1.7949 28 1 1.1997 -2.2762 1.9981 29 1 1.3275 -4.9702 4.5053 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085831273.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:30 Heat of formation + Delta-G solvation = 58.761638 kcal Electronic energy + Delta-G solvation = -12051.011220 eV Core-core repulsion = 9975.406966 eV Total energy + Delta-G solvation = -2075.604254 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.83144 -35.16587 -32.69857 -32.07681 -28.99889 -28.68007 -25.77172 -23.66730 -22.27715 -19.98297 -18.74878 -16.75537 -15.90489 -15.26927 -14.33466 -13.89470 -13.34283 -13.00192 -12.77983 -12.62891 -12.36869 -11.93103 -11.88122 -11.42955 -11.34263 -11.00253 -10.90955 -10.86348 -10.24200 -9.54000 -8.82343 -8.39889 -7.72945 -7.26504 -6.22508 -4.27927 2.80898 3.20941 3.27465 3.31401 3.42631 3.50195 4.30568 5.04069 5.14048 5.48774 5.65946 5.76330 5.89308 5.94258 6.08808 6.13527 6.17457 6.38170 6.59605 6.78562 6.89883 6.95157 7.23463 7.56284 7.62346 7.72036 7.97590 8.00173 8.78610 8.91644 9.37687 10.88454 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.049255 B = 0.009567 C = 0.008718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.338607 B = 2925.904789 C = 3211.050463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.053 3.947 3 C -0.220 4.220 4 C -0.200 4.200 5 C -0.025 4.025 6 C -0.081 4.081 7 N -0.276 5.276 8 N -0.455 5.455 9 C 0.179 3.821 10 C -0.522 4.522 11 H 0.068 0.932 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.281 1.281 18 H 0.063 0.937 19 H 0.074 0.926 20 H 0.067 0.933 21 H 0.131 0.869 22 H 0.127 0.873 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.349 0.651 27 H 0.001 0.999 28 H 0.038 0.962 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 5.946 -6.124 8.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 C -0.245 4.245 4 C -0.226 4.226 5 C -0.139 4.139 6 C -0.138 4.138 7 N -0.038 5.038 8 N -0.178 5.178 9 C 0.054 3.946 10 C -0.561 4.561 11 H 0.086 0.914 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.207 1.207 18 H 0.082 0.918 19 H 0.093 0.907 20 H 0.086 0.914 21 H 0.149 0.851 22 H 0.145 0.855 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.168 0.832 27 H 0.019 0.981 28 H 0.056 0.944 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.530 5.719 -5.934 8.382 hybrid contribution 0.639 -1.181 0.411 1.404 sum 2.169 4.538 -5.523 7.470 Atomic orbital electron populations 1.20187 0.88553 1.02897 1.01900 1.20106 0.93484 0.84004 1.08468 1.20455 0.92773 0.96916 1.14344 1.20413 0.96999 0.92639 1.12529 1.20799 0.85828 0.95147 1.12096 1.20209 0.93661 0.97561 1.02386 1.43356 1.03644 1.02532 1.54218 1.62303 1.49160 0.89606 1.16704 1.20190 0.96851 0.95837 0.81763 1.20967 1.42106 0.98982 0.94092 0.91401 1.24986 0.95331 0.98790 0.95113 1.69986 1.46781 1.37990 0.98155 0.86300 0.78818 0.83148 0.78340 1.19469 1.20851 1.20741 0.91800 0.90746 0.91392 0.85068 0.85474 0.91382 0.92325 0.90703 0.83180 0.98143 0.94365 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.26 36.00 0.37 -0.94 15 2 C 0.05 1.03 7.00 -81.79 -0.57 0.46 15 3 C -0.22 -3.94 10.77 -39.78 -0.43 -4.37 15 4 C -0.20 -3.58 10.76 -39.78 -0.43 -4.01 15 5 C -0.03 -0.48 6.91 -81.79 -0.57 -1.04 15 6 C -0.08 -1.29 10.18 36.00 0.37 -0.93 15 7 N -0.28 -5.78 2.88 -5.44 -0.02 -5.79 15 8 N -0.45 -10.07 6.81 -11.41 -0.08 -10.15 15 9 C 0.18 4.68 5.78 -4.98 -0.03 4.65 15 10 C -0.52 -14.33 9.36 -34.44 -0.32 -14.65 15 11 H 0.07 1.81 7.81 -52.49 -0.41 1.40 15 12 C 0.06 1.69 5.46 -17.81 -0.10 1.59 15 13 N -0.89 -26.08 13.29 55.43 0.74 -25.34 15 14 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 15 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 17 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 18 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 19 H 0.07 1.41 8.13 -51.93 -0.42 0.99 15 20 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.13 1.98 8.06 -52.49 -0.42 1.56 15 22 H 0.13 1.93 8.06 -52.48 -0.42 1.51 15 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.06 0.91 7.47 -51.93 -0.39 0.52 15 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 26 H 0.35 7.17 8.09 -181.36 -1.47 5.70 15 27 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 15 28 H 0.04 1.10 8.14 -51.93 -0.42 0.68 15 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 LS Contribution 255.09 15.07 3.84 3.84 Total: -1.00 -29.87 255.09 -7.44 -37.31 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.20 Total: 3.36 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.71 Total: -19.24 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.64 Total: -41.29 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.87 -7.44 -37.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085831273.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.076 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds