Wall clock time and date at job start Mon Mar 30 2020 01:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34848 * 125.89343 * 2 1 4 4 C 1.40897 * 107.41629 * 179.97438 * 3 2 1 5 5 C 1.34848 * 107.41918 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.89200 * 180.02562 * 5 4 3 7 7 N 1.36345 * 125.88743 * 179.69907 * 2 1 3 8 8 N 1.36599 * 125.63667 * 0.03274 * 7 2 1 9 9 C 1.46900 * 110.99933 * 265.12420 * 8 7 2 10 10 C 1.50696 * 109.47183 * 174.89225 * 9 8 7 11 11 H 1.07992 * 120.00169 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00092 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99486 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00184 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46900 * 359.97438 * 14 12 10 16 16 H 1.48511 * 109.47136 * 119.99610 * 14 12 10 17 17 H 1.48497 * 109.47341 * 239.99842 * 14 12 10 18 18 H 1.08996 * 109.47412 * 90.01802 * 1 2 3 19 19 H 1.08998 * 109.47348 * 210.02373 * 1 2 3 20 20 H 1.08998 * 109.46819 * 330.01561 * 1 2 3 21 21 H 1.07995 * 126.29346 * 359.97438 * 3 2 1 22 22 H 1.08003 * 126.28475 * 180.02562 * 4 3 2 23 23 H 1.08997 * 109.47684 * 95.11737 * 6 5 4 24 24 H 1.08996 * 109.47273 * 215.12638 * 6 5 4 25 25 H 1.09006 * 109.46926 * 335.12204 * 6 5 4 26 26 H 1.00902 * 111.00076 * 141.17313 * 8 7 2 27 27 H 1.09000 * 109.46999 * 294.89394 * 9 8 7 28 28 H 1.09000 * 109.47274 * 54.88640 * 9 8 7 29 29 H 0.97001 * 119.99328 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0924 0.0000 4 6 3.6339 0.6459 0.0006 5 6 3.6090 -0.7024 0.0004 6 6 4.8133 -1.6082 0.0014 7 7 2.3062 -1.1046 0.0058 8 7 1.8733 -2.4002 0.0120 9 6 1.8164 -2.9297 1.3810 10 6 1.2181 -4.3126 1.3603 11 1 0.9104 -4.7539 0.4239 12 6 1.0624 -5.0142 2.5371 13 7 1.4367 -4.4765 3.6775 14 14 0.3201 -6.7281 2.5115 15 1 -0.0159 -7.1011 1.1139 16 1 1.2990 -7.6998 3.0620 17 1 -0.9133 -6.7458 3.3382 18 1 -0.3634 -0.0003 -1.0276 19 1 -0.3634 -0.8897 0.5142 20 1 -0.3633 0.8901 0.5136 21 1 1.9672 2.1206 -0.0004 22 1 4.5160 1.2690 0.0011 23 1 5.0476 -1.9001 1.0251 24 1 4.5990 -2.4982 -0.5902 25 1 5.6645 -1.0815 -0.4301 26 1 2.4550 -2.9786 -0.5755 27 1 2.8237 -2.9758 1.7949 28 1 1.1997 -2.2762 1.9981 29 1 1.3275 -4.9702 4.5053 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085831273.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:30 Heat of formation + Delta-G solvation = 40.929895 kcal Electronic energy + Delta-G solvation = -12051.784462 eV Core-core repulsion = 9975.406966 eV Total energy + Delta-G solvation = -2076.377496 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.32560 -36.96401 -34.73717 -33.45063 -30.83594 -30.01462 -27.66674 -25.03688 -24.31166 -21.46265 -20.37617 -18.70868 -17.53838 -17.15568 -16.12174 -15.47243 -14.85989 -14.59333 -14.28840 -14.14936 -13.95524 -13.71357 -13.25872 -13.02900 -12.81420 -12.74067 -12.61494 -12.34447 -12.21425 -11.56553 -10.85160 -10.24736 -9.35020 -8.70726 -8.35178 -6.49852 1.29828 1.39539 1.40419 1.54401 1.85285 2.09996 2.36333 2.99512 3.47341 4.13360 4.30464 4.39539 4.57392 4.62803 4.66545 4.78360 4.83774 4.91415 4.93298 5.07788 5.29212 5.35141 5.49661 5.62029 5.78148 5.89800 6.24052 6.44037 6.64582 7.21714 7.27027 8.77147 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.049255 B = 0.009567 C = 0.008718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.338607 B = 2925.904789 C = 3211.050463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.021 3.979 3 C -0.216 4.216 4 C -0.200 4.200 5 C -0.050 4.050 6 C -0.078 4.078 7 N -0.297 5.297 8 N -0.448 5.448 9 C 0.203 3.797 10 C -0.540 4.540 11 H 0.074 0.926 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.983 3.017 15 H -0.259 1.259 16 H -0.275 1.275 17 H -0.277 1.277 18 H 0.080 0.920 19 H 0.043 0.957 20 H 0.093 0.907 21 H 0.162 0.838 22 H 0.157 0.843 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.108 0.892 26 H 0.357 0.643 27 H -0.027 1.027 28 H 0.002 0.998 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 6.107 -7.022 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 C -0.241 4.241 4 C -0.225 4.225 5 C -0.162 4.162 6 C -0.136 4.136 7 N -0.061 5.061 8 N -0.171 5.171 9 C 0.076 3.924 10 C -0.579 4.579 11 H 0.092 0.908 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.806 3.194 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.203 1.203 18 H 0.099 0.901 19 H 0.062 0.938 20 H 0.112 0.888 21 H 0.179 0.821 22 H 0.175 0.825 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.127 0.873 26 H 0.177 0.823 27 H -0.009 1.009 28 H 0.020 0.980 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.583 5.899 -6.857 9.182 hybrid contribution 0.668 -1.101 0.673 1.453 sum 2.251 4.798 -6.184 8.144 Atomic orbital electron populations 1.20218 0.87296 1.02618 1.02912 1.20759 0.94840 0.84233 1.09291 1.20901 0.92610 0.97866 1.12688 1.20870 0.98171 0.92389 1.11081 1.21403 0.85813 0.96470 1.12490 1.20280 0.93828 0.97642 1.01811 1.43520 1.04833 1.01864 1.55866 1.62045 1.50067 0.90721 1.14284 1.19717 0.94270 0.95055 0.83340 1.21304 1.42326 0.99630 0.94599 0.90794 1.25998 0.95433 1.03293 0.94495 1.70115 1.47860 1.39978 0.99002 0.85130 0.77893 0.77482 0.78861 1.18261 1.20070 1.20271 0.90096 0.93793 0.88812 0.82053 0.82501 0.92780 0.92304 0.87334 0.82291 1.00935 0.98035 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.42 10.26 71.23 0.73 -1.69 15 2 C 0.02 0.79 7.00 41.08 0.29 1.08 15 3 C -0.22 -7.27 10.77 22.14 0.24 -7.03 15 4 C -0.20 -6.72 10.76 22.14 0.24 -6.48 15 5 C -0.05 -1.86 6.91 41.08 0.28 -1.57 15 6 C -0.08 -2.45 10.18 71.23 0.73 -1.72 15 7 N -0.30 -12.47 2.88 -171.12 -0.49 -12.97 15 8 N -0.45 -20.26 6.81 -190.01 -1.29 -21.56 15 9 C 0.20 10.99 5.78 85.56 0.49 11.49 15 10 C -0.54 -30.07 9.36 25.60 0.24 -29.83 15 11 H 0.07 3.94 7.81 -2.91 -0.02 3.92 15 12 C 0.01 0.41 5.46 84.65 0.46 0.87 15 13 N -0.93 -55.48 13.29 21.45 0.28 -55.19 15 14 Si 0.98 42.97 29.54 68.60 2.03 45.00 15 15 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 16 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 18 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 19 H 0.04 1.70 8.13 -2.39 -0.02 1.68 15 20 H 0.09 2.54 8.14 -2.39 -0.02 2.52 15 21 H 0.16 4.33 8.06 -2.91 -0.02 4.30 15 22 H 0.16 4.23 8.06 -2.91 -0.02 4.21 15 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.06 1.80 7.47 -2.39 -0.02 1.78 15 25 H 0.11 2.59 8.14 -2.38 -0.02 2.57 15 26 H 0.36 14.87 8.09 -210.55 -1.70 13.17 15 27 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 15 28 H 0.00 0.09 8.14 -2.39 -0.02 0.07 15 29 H 0.27 14.93 8.31 -92.71 -0.77 14.16 15 Total: -1.00 -64.50 255.09 3.65 -60.85 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.58 Total: 18.76 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 3.70 Total: -34.89 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -1.50 Total: -89.72 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -64.50 3.65 -60.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085831273.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.777 kcal (2) G-P(sol) polarization free energy of solvation -64.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds