Wall clock time and date at job start Mon Mar 30 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99843 * 2 1 4 4 H 1.08998 * 109.47376 * 34.99125 * 3 2 1 5 5 C 1.53003 * 109.46653 * 274.99329 * 3 2 1 6 6 C 1.50702 * 109.47116 * 154.99750 * 3 2 1 7 7 C 1.41172 * 126.24596 * 39.68715 * 6 3 2 8 8 C 1.34809 * 107.50715 * 179.82990 * 7 6 3 9 9 N 1.36848 * 108.18209 * 0.42798 * 8 7 6 10 10 C 1.37497 * 125.68927 * 179.70014 * 9 8 7 11 11 H 1.07998 * 119.99549 * 199.24027 * 10 9 8 12 12 C 1.38915 * 119.99998 * 19.24067 * 10 9 8 13 13 N 1.31360 * 120.00017 * 10.46165 * 12 10 9 14 14 Si 1.86798 * 119.99980 * 190.46240 * 12 10 9 15 15 H 1.48501 * 109.47120 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47126 * 120.00064 * 14 12 10 17 17 H 1.48507 * 109.47181 * 240.00190 * 14 12 10 18 18 C 1.34804 * 126.24440 * 219.99824 * 6 3 2 19 19 H 1.08998 * 109.47456 * 300.00351 * 1 2 3 20 20 H 1.08998 * 109.46943 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46555 * 60.00728 * 1 2 3 22 22 H 1.00906 * 110.99645 * 123.94595 * 2 1 3 23 23 H 1.09007 * 109.47070 * 180.02562 * 5 3 2 24 24 H 1.08998 * 109.47063 * 299.99988 * 5 3 2 25 25 H 1.08999 * 109.47174 * 60.00189 * 5 3 2 26 26 H 1.07999 * 126.24420 * 359.97438 * 7 6 3 27 27 H 1.07994 * 125.90430 * 180.16958 * 8 7 6 28 28 H 0.97006 * 119.99531 * 179.97438 * 13 12 10 29 29 H 1.07998 * 125.90970 * 359.97438 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 0.5893 5 6 2.0609 1.8924 -1.4371 6 6 3.3776 1.3790 0.6005 7 6 4.3811 0.4070 0.3976 8 6 5.4628 0.7866 1.1070 9 7 5.1621 1.9560 1.7511 10 6 6.0076 2.6561 2.5792 11 1 5.6063 3.3771 3.2760 12 6 7.3779 2.4359 2.5195 13 7 7.8861 1.7198 1.5426 14 14 8.4978 3.1582 3.8285 15 1 7.6845 3.9189 4.8109 16 1 9.2174 2.0614 4.5245 17 1 9.4819 4.0691 3.1904 18 6 3.8793 2.3120 1.4341 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5137 -0.8901 22 1 1.8306 -0.5261 0.7815 23 1 2.4520 2.9100 -1.4372 24 1 2.7167 1.2515 -2.0264 25 1 1.0613 1.8870 -1.8715 26 1 4.2983 -0.4779 -0.2160 27 1 6.4024 0.2571 1.1613 28 1 8.8431 1.5664 1.5008 29 1 3.3591 3.1891 1.7898 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085837787.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:35 Heat of formation + Delta-G solvation = 41.108248 kcal Electronic energy + Delta-G solvation = -11965.568859 eV Core-core repulsion = 9889.199097 eV Total energy + Delta-G solvation = -2076.369762 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.59313 -36.12855 -33.29815 -30.66611 -29.17375 -26.87673 -25.30305 -24.19921 -21.03426 -19.55217 -18.13490 -17.37319 -15.42915 -15.11409 -14.35644 -13.98893 -13.64724 -12.87986 -12.45834 -12.43317 -11.92085 -11.59502 -11.44317 -11.35384 -11.09946 -10.93608 -10.75386 -10.49826 -10.35484 -9.87413 -9.17481 -7.91073 -7.44622 -6.69671 -6.43470 -4.29413 2.96714 3.06590 3.11727 3.83226 3.92067 4.39629 4.87485 5.05487 5.31111 5.62849 5.72678 5.85769 6.10250 6.15367 6.24353 6.41431 6.60104 6.66044 6.93519 7.03466 7.11465 7.32426 7.54194 7.69577 7.82212 8.01249 8.11549 8.61899 8.68047 9.27284 9.70587 10.38055 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.083550 B = 0.008257 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.048724 B = 3390.083858 C = 3448.705500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.688 5.688 3 C 0.170 3.830 4 H 0.029 0.971 5 C -0.126 4.126 6 C -0.212 4.212 7 C -0.238 4.238 8 C -0.004 4.004 9 N -0.256 5.256 10 C -0.349 4.349 11 H 0.103 0.897 12 C 0.044 3.956 13 N -0.844 5.844 14 Si 0.937 3.063 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.276 1.276 18 C -0.076 4.076 19 H 0.014 0.986 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.346 0.654 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.037 0.963 26 H 0.110 0.890 27 H 0.160 0.840 28 H 0.276 0.724 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.455 -0.573 -0.244 6.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.319 5.319 3 C 0.061 3.939 4 H 0.047 0.953 5 C -0.185 4.185 6 C -0.220 4.220 7 C -0.262 4.262 8 C -0.142 4.142 9 N 0.087 4.913 10 C -0.477 4.477 11 H 0.121 0.879 12 C -0.164 4.164 13 N -0.476 5.476 14 Si 0.761 3.239 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.201 1.201 18 C -0.212 4.212 19 H 0.032 0.968 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.164 0.836 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.128 0.872 27 H 0.177 0.823 28 H 0.087 0.913 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.946 -0.505 -0.765 6.016 hybrid contribution 0.422 0.674 1.402 1.612 sum -5.524 0.170 0.637 5.563 Atomic orbital electron populations 1.22199 0.89551 1.00782 0.99641 1.60491 1.05858 1.15183 1.50366 1.19555 0.92078 0.87522 0.94751 0.95315 1.21712 0.99826 1.00340 0.96581 1.18806 0.95611 1.00426 1.07189 1.20260 0.94476 1.02229 1.09194 1.21986 1.00026 0.90105 1.02046 1.40245 1.08307 1.14479 1.28293 1.19942 0.87861 1.22851 1.17008 0.87921 1.25496 0.97656 0.96360 0.96938 1.69949 1.13917 1.35715 1.28007 0.85724 0.79460 0.78826 0.79848 1.18918 1.19965 1.20148 1.21121 0.88972 1.02748 1.08348 0.96751 0.92284 0.92345 0.83606 0.93059 0.92244 0.94443 0.87161 0.82327 0.91325 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.50 60.07 0.63 1.02 15 2 N -0.69 -11.86 6.47 -115.25 -0.75 -12.61 15 3 C 0.17 3.25 3.06 -68.86 -0.21 3.04 15 4 H 0.03 0.54 7.79 -51.93 -0.40 0.13 15 5 C -0.13 -2.24 9.40 37.16 0.35 -1.89 15 6 C -0.21 -4.89 4.84 -104.73 -0.51 -5.39 15 7 C -0.24 -5.82 10.33 -39.68 -0.41 -6.23 15 8 C 0.00 -0.11 10.06 -16.53 -0.17 -0.28 15 9 N -0.26 -6.97 2.91 -62.01 -0.18 -7.15 15 10 C -0.35 -9.44 10.08 -14.76 -0.15 -9.59 15 11 H 0.10 2.63 7.85 -52.49 -0.41 2.21 15 12 C 0.04 1.15 5.37 -17.50 -0.09 1.05 15 13 N -0.84 -22.77 10.82 55.49 0.60 -22.17 15 14 Si 0.94 19.48 29.56 -169.99 -5.03 14.46 15 15 H -0.27 -5.37 7.11 56.52 0.40 -4.96 15 16 H -0.27 -5.63 7.11 56.52 0.40 -5.22 15 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 18 C -0.08 -1.88 11.28 -16.53 -0.19 -2.06 15 19 H 0.01 0.19 8.06 -51.93 -0.42 -0.23 15 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.06 0.77 7.44 -51.93 -0.39 0.38 15 22 H 0.35 6.11 8.24 -39.29 -0.32 5.79 15 23 H 0.05 0.90 8.14 -51.92 -0.42 0.48 15 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.04 0.57 7.45 -51.93 -0.39 0.18 15 26 H 0.11 2.53 8.06 -52.49 -0.42 2.11 15 27 H 0.16 4.39 6.34 -52.49 -0.33 4.06 15 28 H 0.28 6.85 8.31 -40.82 -0.34 6.51 15 29 H 0.13 2.91 8.06 -52.49 -0.42 2.48 15 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -28.16 248.00 -6.27 -34.43 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -3.91 Total: 9.63 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -0.74 Total: -20.32 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.32 Total: -41.93 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.16 -6.27 -34.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085837787.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.539 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds