Wall clock time and date at job start Mon Mar 30 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99843 * 2 1 4 4 H 1.08998 * 109.47376 * 34.99125 * 3 2 1 5 5 C 1.53003 * 109.46653 * 274.99329 * 3 2 1 6 6 C 1.50702 * 109.47116 * 154.99750 * 3 2 1 7 7 C 1.41172 * 126.24596 * 39.68715 * 6 3 2 8 8 C 1.34809 * 107.50715 * 179.82990 * 7 6 3 9 9 N 1.36848 * 108.18209 * 0.42798 * 8 7 6 10 10 C 1.37497 * 125.68927 * 179.70014 * 9 8 7 11 11 H 1.07998 * 119.99549 * 199.24027 * 10 9 8 12 12 C 1.38915 * 119.99998 * 19.24067 * 10 9 8 13 13 N 1.31360 * 120.00017 * 10.46165 * 12 10 9 14 14 Si 1.86798 * 119.99980 * 190.46240 * 12 10 9 15 15 H 1.48501 * 109.47120 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47126 * 120.00064 * 14 12 10 17 17 H 1.48507 * 109.47181 * 240.00190 * 14 12 10 18 18 C 1.34804 * 126.24440 * 219.99824 * 6 3 2 19 19 H 1.08998 * 109.47456 * 300.00351 * 1 2 3 20 20 H 1.08998 * 109.46943 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46555 * 60.00728 * 1 2 3 22 22 H 1.00906 * 110.99645 * 123.94595 * 2 1 3 23 23 H 1.09007 * 109.47070 * 180.02562 * 5 3 2 24 24 H 1.08998 * 109.47063 * 299.99988 * 5 3 2 25 25 H 1.08999 * 109.47174 * 60.00189 * 5 3 2 26 26 H 1.07999 * 126.24420 * 359.97438 * 7 6 3 27 27 H 1.07994 * 125.90430 * 180.16958 * 8 7 6 28 28 H 0.97006 * 119.99531 * 179.97438 * 13 12 10 29 29 H 1.07998 * 125.90970 * 359.97438 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 0.5893 5 6 2.0609 1.8924 -1.4371 6 6 3.3776 1.3790 0.6005 7 6 4.3811 0.4070 0.3976 8 6 5.4628 0.7866 1.1070 9 7 5.1621 1.9560 1.7511 10 6 6.0076 2.6561 2.5792 11 1 5.6063 3.3771 3.2760 12 6 7.3779 2.4359 2.5195 13 7 7.8861 1.7198 1.5426 14 14 8.4978 3.1582 3.8285 15 1 7.6845 3.9189 4.8109 16 1 9.2174 2.0614 4.5245 17 1 9.4819 4.0691 3.1904 18 6 3.8793 2.3120 1.4341 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5137 -0.8901 22 1 1.8306 -0.5261 0.7815 23 1 2.4520 2.9100 -1.4372 24 1 2.7167 1.2515 -2.0264 25 1 1.0613 1.8870 -1.8715 26 1 4.2983 -0.4779 -0.2160 27 1 6.4024 0.2571 1.1613 28 1 8.8431 1.5664 1.5008 29 1 3.3591 3.1891 1.7898 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085837787.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:35 Heat of formation + Delta-G solvation = 23.827604 kcal Electronic energy + Delta-G solvation = -11966.318204 eV Core-core repulsion = 9889.199097 eV Total energy + Delta-G solvation = -2077.119107 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.52615 -37.60123 -35.20609 -32.33353 -30.91395 -28.73477 -26.97021 -25.74844 -22.59607 -21.52520 -20.00964 -19.20614 -17.40280 -16.65449 -15.90297 -15.50154 -15.17745 -14.59469 -14.42140 -13.79517 -13.46931 -13.42133 -13.09145 -12.92663 -12.71661 -12.54440 -12.44335 -12.13354 -12.01892 -11.53542 -11.07645 -9.40866 -9.23651 -8.64816 -8.41326 -6.34159 1.30386 1.36592 1.53010 1.96150 2.15445 2.47663 3.04886 3.35486 3.55731 4.25751 4.51215 4.65709 4.68014 4.71276 4.83480 4.96348 5.05803 5.06522 5.14739 5.14975 5.37775 5.51562 5.72456 5.80540 6.00036 6.38845 6.60372 6.63504 6.77068 7.29094 7.70563 8.44559 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.083550 B = 0.008257 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.048724 B = 3390.083858 C = 3448.705500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.695 5.695 3 C 0.172 3.828 4 H 0.038 0.962 5 C -0.122 4.122 6 C -0.199 4.199 7 C -0.237 4.237 8 C -0.035 4.035 9 N -0.274 5.274 10 C -0.385 4.385 11 H 0.109 0.891 12 C 0.000 4.000 13 N -0.878 5.878 14 Si 1.015 2.985 15 H -0.255 1.255 16 H -0.268 1.268 17 H -0.270 1.270 18 C -0.097 4.097 19 H 0.019 0.981 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.341 0.659 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.282 0.718 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.408 -0.150 0.028 7.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.326 5.326 3 C 0.063 3.937 4 H 0.055 0.945 5 C -0.180 4.180 6 C -0.207 4.207 7 C -0.261 4.261 8 C -0.173 4.173 9 N 0.067 4.933 10 C -0.512 4.512 11 H 0.127 0.873 12 C -0.206 4.206 13 N -0.510 5.510 14 Si 0.835 3.165 15 H -0.178 1.178 16 H -0.193 1.193 17 H -0.195 1.195 18 C -0.233 4.233 19 H 0.038 0.962 20 H 0.096 0.904 21 H 0.086 0.914 22 H 0.159 0.841 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.160 0.840 28 H 0.092 0.908 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.932 -0.084 -0.508 6.951 hybrid contribution 0.645 0.501 1.261 1.502 sum -6.287 0.417 0.753 6.346 Atomic orbital electron populations 1.22295 0.87135 1.02357 1.00335 1.60492 1.08119 1.13762 1.50229 1.19581 0.89833 0.89004 0.95326 0.94452 1.21652 1.01202 0.99610 0.95507 1.19230 0.97106 0.98707 1.05613 1.20433 0.94218 1.02826 1.08662 1.21983 1.00382 0.90994 1.03926 1.40487 1.09203 1.14724 1.28866 1.20407 0.88884 1.23911 1.18030 0.87281 1.26593 0.98747 0.96321 0.98909 1.70058 1.14641 1.36647 1.29676 0.84585 0.77018 0.78129 0.76784 1.17818 1.19312 1.19455 1.21647 0.88613 1.03946 1.09080 0.96196 0.90379 0.91370 0.84124 0.93440 0.93653 0.91600 0.85994 0.84037 0.90776 0.83688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.50 127.69 1.34 2.03 15 2 N -0.69 -22.42 6.47 -518.53 -3.35 -25.78 15 3 C 0.17 6.23 3.06 44.17 0.13 6.37 15 4 H 0.04 1.30 7.79 -2.39 -0.02 1.28 15 5 C -0.12 -4.05 9.40 71.98 0.68 -3.37 15 6 C -0.20 -9.04 4.84 -19.93 -0.10 -9.13 15 7 C -0.24 -11.68 10.33 22.20 0.23 -11.45 15 8 C -0.04 -1.97 10.06 83.12 0.84 -1.13 15 9 N -0.27 -15.25 2.91 -350.09 -1.02 -16.27 15 10 C -0.39 -21.15 10.08 83.97 0.85 -20.30 15 11 H 0.11 5.62 7.85 -2.91 -0.02 5.60 15 12 C 0.00 -0.01 5.37 84.93 0.46 0.44 15 13 N -0.88 -48.28 10.82 21.65 0.23 -48.05 15 14 Si 1.01 39.68 29.56 68.60 2.03 41.71 15 15 H -0.25 -9.43 7.11 99.48 0.71 -8.73 15 16 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 17 H -0.27 -10.19 7.11 99.48 0.71 -9.49 15 18 C -0.10 -4.84 11.28 83.12 0.94 -3.90 15 19 H 0.02 0.47 8.06 -2.39 -0.02 0.45 15 20 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.07 1.54 7.44 -2.39 -0.02 1.52 15 22 H 0.34 11.51 8.24 -89.69 -0.74 10.77 15 23 H 0.05 1.59 8.14 -2.38 -0.02 1.57 15 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.07 1.81 7.45 -2.39 -0.02 1.79 15 26 H 0.12 5.59 8.06 -2.91 -0.02 5.57 15 27 H 0.14 8.20 6.34 -2.91 -0.02 8.18 15 28 H 0.28 14.18 8.31 -92.70 -0.77 13.41 15 29 H 0.15 6.50 8.06 -2.91 -0.02 6.47 15 Total: -1.00 -60.33 248.00 3.64 -56.68 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.39 Total: 32.16 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 5.36 Total: -40.45 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -4.14 Total: -90.09 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -60.33 3.64 -56.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085837787.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.511 kcal (2) G-P(sol) polarization free energy of solvation -60.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds