Wall clock time and date at job start Mon Mar 30 2020 01:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48496 * 109.47491 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99945 * 3 2 1 7 7 C 1.40145 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.41466 * 119.99835 * 0.27921 * 7 2 1 10 10 N 1.32343 * 123.87403 * 359.42324 * 9 7 2 11 11 C 1.44458 * 107.83405 * 180.08450 * 10 9 7 12 12 H 1.09007 * 108.98754 * 268.00311 * 11 10 9 13 13 C 1.50762 * 120.59075 * 141.15343 * 11 10 9 14 14 C 1.53995 * 106.88828 * 179.30350 * 13 11 10 15 15 C 1.52502 * 111.94383 * 56.06571 * 14 13 11 16 16 C 1.55251 * 112.21709 * 306.61046 * 15 14 13 17 17 C 1.51477 * 105.75632 * 57.41439 * 16 15 14 18 18 H 1.09004 * 110.20618 * 54.15918 * 17 16 15 19 19 N 1.40159 * 123.87519 * 179.71810 * 9 7 2 20 20 H 0.97000 * 119.99498 * 0.02562 * 1 2 3 21 21 H 1.09011 * 109.96377 * 298.64470 * 13 11 10 22 22 H 1.09001 * 109.97309 * 59.86168 * 13 11 10 23 23 H 1.09003 * 108.98929 * 176.69776 * 14 13 11 24 24 H 1.08995 * 108.98636 * 295.43318 * 14 13 11 25 25 H 1.08995 * 109.01277 * 67.09243 * 15 14 13 26 26 H 1.09000 * 109.00750 * 185.97017 * 15 14 13 27 27 H 1.09000 * 110.28854 * 298.42837 * 16 15 14 28 28 H 1.08996 * 110.41289 * 176.46805 * 16 15 14 29 29 H 0.97003 * 127.95512 * 335.58593 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0071 -1.2137 0.0005 8 1 3.0871 -1.2136 0.0001 9 6 1.2998 -2.4388 -0.0049 10 7 -0.0206 -2.5283 0.0004 11 6 -0.3691 -3.9302 -0.0058 12 1 -0.4940 -4.2600 -1.0373 13 6 -1.5314 -4.4355 0.8105 14 6 -1.6286 -5.9518 0.5598 15 6 -0.3226 -6.6682 0.8863 16 6 0.8915 -6.0398 0.1507 17 6 0.9181 -4.5844 0.5698 18 1 0.9297 -4.5058 1.6569 19 7 1.9170 -3.6972 -0.0105 20 1 -0.4849 0.8401 -0.0004 21 1 -1.3542 -4.2437 1.8689 22 1 -2.4512 -3.9444 0.4925 23 1 -2.4240 -6.3637 1.1810 24 1 -1.8745 -6.1229 -0.4882 25 1 -0.1468 -6.6140 1.9606 26 1 -0.4087 -7.7145 0.5931 27 1 0.7603 -6.1160 -0.9287 28 1 1.8156 -6.5329 0.4522 29 1 2.8050 -3.9247 -0.3277 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100472523.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:47 Heat of formation + Delta-G solvation = 24.617823 kcal Electronic energy + Delta-G solvation = -12360.150731 eV Core-core repulsion = 10283.065891 eV Total energy + Delta-G solvation = -2077.084841 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.20388 -35.24092 -32.89847 -30.92925 -28.50760 -27.93252 -25.56214 -21.39025 -20.90486 -19.59494 -18.93153 -16.50148 -15.45783 -14.75815 -14.11594 -13.92545 -13.72401 -13.13285 -12.28724 -12.02910 -11.60640 -11.23220 -11.07480 -10.94587 -10.81756 -10.61202 -10.17889 -10.09298 -9.76060 -9.58115 -9.52115 -8.47751 -7.30723 -6.35755 -6.20395 -4.41734 3.17161 3.23040 3.24769 4.14011 4.34356 4.86246 5.20465 5.27677 5.49161 5.55523 5.84918 5.99545 6.03435 6.07269 6.10117 6.18179 6.37159 6.46989 6.67962 6.77724 6.83864 6.96217 7.29842 7.38653 7.65142 8.08980 8.36815 8.57616 9.10326 9.77587 10.36111 10.67816 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.075924 B = 0.010135 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.703371 B = 2762.019529 C = 3054.398702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.081 3.919 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.449 3.551 10 N -0.598 5.598 11 C 0.062 3.938 12 H 0.024 0.976 13 C -0.095 4.095 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.110 4.110 17 C 0.103 3.897 18 H 0.044 0.956 19 N -0.800 5.800 20 H 0.269 0.731 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -7.284 1.044 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.506 4.506 8 H 0.091 0.909 9 C 0.198 3.802 10 N -0.336 5.336 11 C -0.051 4.051 12 H 0.042 0.958 13 C -0.133 4.133 14 C -0.154 4.154 15 C -0.148 4.148 16 C -0.149 4.149 17 C -0.005 4.005 18 H 0.061 0.939 19 N -0.448 5.448 20 H 0.080 0.920 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.600 -6.735 1.070 6.846 hybrid contribution 1.438 -0.147 -0.130 1.452 sum 0.838 -6.882 0.940 6.996 Atomic orbital electron populations 1.70033 1.06805 1.27180 1.31971 1.25699 0.94695 1.00070 0.93827 0.86449 0.79871 0.81210 0.79379 1.19407 1.20551 1.19389 1.18685 0.93309 0.88164 1.50474 0.90916 1.21024 0.88365 0.83611 0.87169 1.75858 1.07681 1.07773 1.42266 1.21891 0.92252 0.95548 0.95420 0.95849 1.21093 0.99361 0.92981 0.99870 1.21571 0.96433 0.96427 1.00928 1.21675 0.94697 0.98332 1.00104 1.21733 0.97148 0.95877 1.00148 1.21779 0.92472 0.90256 0.96020 0.93865 1.46114 1.16783 1.08250 1.73675 0.92027 0.92703 0.92146 0.92711 0.92699 0.92483 0.92685 0.91972 0.92811 0.77379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -21.04 11.78 55.56 0.65 -20.39 15 2 C 0.08 2.19 5.50 -17.35 -0.10 2.09 15 3 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 15 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.47 -13.02 9.51 -37.64 -0.36 -13.38 15 8 H 0.07 1.89 7.85 -52.49 -0.41 1.48 15 9 C 0.45 12.62 7.28 -153.03 -1.11 11.50 15 10 N -0.60 -17.40 9.72 -54.04 -0.53 -17.92 15 11 C 0.06 1.51 3.10 -68.85 -0.21 1.29 15 12 H 0.02 0.60 7.71 -51.92 -0.40 0.20 15 13 C -0.09 -1.92 6.04 -27.33 -0.16 -2.09 15 14 C -0.12 -1.84 5.81 -26.47 -0.15 -2.00 15 15 C -0.11 -1.64 5.81 -25.79 -0.15 -1.79 15 16 C -0.11 -1.89 6.14 -26.31 -0.16 -2.05 15 17 C 0.10 2.24 3.12 -67.86 -0.21 2.03 15 18 H 0.04 1.00 7.94 -51.93 -0.41 0.59 15 19 N -0.80 -18.90 6.77 -52.99 -0.36 -19.26 15 20 H 0.27 7.05 8.29 -40.82 -0.34 6.71 15 21 H 0.05 1.13 8.01 -51.92 -0.42 0.72 15 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 27 H 0.06 1.08 7.89 -51.93 -0.41 0.67 15 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 29 H 0.39 8.14 8.96 -40.82 -0.37 7.77 15 LS Contribution 236.95 15.07 3.57 3.57 Total: -1.00 -30.78 236.95 -8.39 -39.17 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.09 Total: 4.56 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.62 Total: -4.39 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.23 Total: -57.58 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.78 -8.39 -39.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100472523.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.790 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds