Wall clock time and date at job start Mon Mar 30 2020 01:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48496 * 109.47491 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99945 * 3 2 1 7 7 C 1.40145 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.41466 * 119.99835 * 0.27921 * 7 2 1 10 10 N 1.32343 * 123.87403 * 359.42324 * 9 7 2 11 11 C 1.44458 * 107.83405 * 180.08450 * 10 9 7 12 12 H 1.09007 * 108.98754 * 268.00311 * 11 10 9 13 13 C 1.50762 * 120.59075 * 141.15343 * 11 10 9 14 14 C 1.53995 * 106.88828 * 179.30350 * 13 11 10 15 15 C 1.52502 * 111.94383 * 56.06571 * 14 13 11 16 16 C 1.55251 * 112.21709 * 306.61046 * 15 14 13 17 17 C 1.51477 * 105.75632 * 57.41439 * 16 15 14 18 18 H 1.09004 * 110.20618 * 54.15918 * 17 16 15 19 19 N 1.40159 * 123.87519 * 179.71810 * 9 7 2 20 20 H 0.97000 * 119.99498 * 0.02562 * 1 2 3 21 21 H 1.09011 * 109.96377 * 298.64470 * 13 11 10 22 22 H 1.09001 * 109.97309 * 59.86168 * 13 11 10 23 23 H 1.09003 * 108.98929 * 176.69776 * 14 13 11 24 24 H 1.08995 * 108.98636 * 295.43318 * 14 13 11 25 25 H 1.08995 * 109.01277 * 67.09243 * 15 14 13 26 26 H 1.09000 * 109.00750 * 185.97017 * 15 14 13 27 27 H 1.09000 * 110.28854 * 298.42837 * 16 15 14 28 28 H 1.08996 * 110.41289 * 176.46805 * 16 15 14 29 29 H 0.97003 * 127.95512 * 335.58593 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0071 -1.2137 0.0005 8 1 3.0871 -1.2136 0.0001 9 6 1.2998 -2.4388 -0.0049 10 7 -0.0206 -2.5283 0.0004 11 6 -0.3691 -3.9302 -0.0058 12 1 -0.4940 -4.2600 -1.0373 13 6 -1.5314 -4.4355 0.8105 14 6 -1.6286 -5.9518 0.5598 15 6 -0.3226 -6.6682 0.8863 16 6 0.8915 -6.0398 0.1507 17 6 0.9181 -4.5844 0.5698 18 1 0.9297 -4.5058 1.6569 19 7 1.9170 -3.6972 -0.0105 20 1 -0.4849 0.8401 -0.0004 21 1 -1.3542 -4.2437 1.8689 22 1 -2.4512 -3.9444 0.4925 23 1 -2.4240 -6.3637 1.1810 24 1 -1.8745 -6.1229 -0.4882 25 1 -0.1468 -6.6140 1.9606 26 1 -0.4087 -7.7145 0.5931 27 1 0.7603 -6.1160 -0.9287 28 1 1.8156 -6.5329 0.4522 29 1 2.8050 -3.9247 -0.3277 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100472523.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:47 Heat of formation + Delta-G solvation = 2.632640 kcal Electronic energy + Delta-G solvation = -12361.104080 eV Core-core repulsion = 10283.065891 eV Total energy + Delta-G solvation = -2078.038190 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.98274 -36.91060 -34.88022 -32.64367 -30.29230 -29.71335 -27.45433 -23.05712 -22.47577 -21.37798 -20.74620 -18.48194 -17.39744 -16.46157 -15.91600 -15.43099 -15.27280 -14.71767 -13.90219 -13.74839 -13.27516 -12.95543 -12.76423 -12.65411 -12.42727 -12.31991 -11.83177 -11.58106 -11.46420 -11.34122 -11.20583 -10.46679 -9.30798 -8.36236 -8.22431 -6.57551 1.45203 1.45662 1.58377 2.30192 2.31791 3.14854 3.46129 3.81234 3.94908 4.02157 4.37552 4.48241 4.53019 4.55846 4.60273 4.81179 4.97759 5.12470 5.19438 5.22277 5.28615 5.35112 5.37410 5.59559 5.68745 6.14418 6.30049 6.63750 7.02934 7.84397 8.31824 8.67042 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.075924 B = 0.010135 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.703371 B = 2762.019529 C = 3054.398702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.031 3.969 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.083 0.917 9 C 0.425 3.575 10 N -0.648 5.648 11 C 0.049 3.951 12 H 0.006 0.994 13 C -0.092 4.092 14 C -0.108 4.108 15 C -0.106 4.106 16 C -0.103 4.103 17 C 0.110 3.890 18 H 0.028 0.972 19 N -0.796 5.796 20 H 0.274 0.726 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.084 0.916 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -8.286 1.332 8.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.189 4.189 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.538 4.538 8 H 0.101 0.899 9 C 0.173 3.827 10 N -0.386 5.386 11 C -0.064 4.064 12 H 0.024 0.976 13 C -0.131 4.131 14 C -0.146 4.146 15 C -0.144 4.144 16 C -0.141 4.141 17 C 0.002 3.998 18 H 0.046 0.954 19 N -0.446 5.446 20 H 0.084 0.916 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.103 0.897 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.167 -7.778 1.356 7.897 hybrid contribution 1.177 0.143 -0.230 1.207 sum 1.343 -7.635 1.127 7.833 Atomic orbital electron populations 1.70186 1.08920 1.28601 1.32859 1.26780 0.95563 1.04096 0.92467 0.85140 0.78290 0.75469 0.79844 1.18353 1.19794 1.18425 1.19188 0.94093 0.89127 1.51433 0.89874 1.21367 0.88855 0.85229 0.87203 1.75746 1.08783 1.11308 1.42790 1.22050 0.95185 0.93856 0.95300 0.97624 1.21097 0.97137 0.96415 0.98417 1.21534 0.98365 0.92814 1.01885 1.21697 0.92663 0.99847 1.00224 1.21738 0.99600 0.92468 1.00292 1.21822 0.90329 0.92740 0.94896 0.95408 1.46063 1.17618 1.07520 1.73387 0.91619 0.93654 0.93453 0.89725 0.92336 0.91838 0.88953 0.92243 0.90422 0.75983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.90 11.78 21.85 0.26 -45.64 15 2 C 0.03 1.70 5.50 85.33 0.47 2.17 15 3 Si 0.99 40.51 29.56 68.60 2.03 42.54 15 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 15 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 7 C -0.50 -28.36 9.51 23.53 0.22 -28.14 15 8 H 0.08 4.36 7.85 -2.91 -0.02 4.33 15 9 C 0.43 24.56 7.28 133.26 0.97 25.53 15 10 N -0.65 -39.08 9.72 -324.89 -3.16 -42.24 15 11 C 0.05 2.44 3.10 45.48 0.14 2.58 15 12 H 0.01 0.31 7.71 -2.38 -0.02 0.29 15 13 C -0.09 -3.76 6.04 30.20 0.18 -3.58 15 14 C -0.11 -3.18 5.81 30.77 0.18 -3.00 15 15 C -0.11 -2.79 5.81 31.20 0.18 -2.61 15 16 C -0.10 -3.25 6.14 30.87 0.19 -3.06 15 17 C 0.11 4.75 3.12 45.49 0.14 4.89 15 18 H 0.03 1.29 7.94 -2.38 -0.02 1.27 15 19 N -0.80 -37.97 6.77 -321.56 -2.18 -40.15 15 20 H 0.27 14.70 8.29 -92.71 -0.77 13.93 15 21 H 0.04 1.89 8.01 -2.38 -0.02 1.87 15 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 15 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 27 H 0.06 1.93 7.89 -2.39 -0.02 1.91 15 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 29 H 0.40 16.70 8.96 -92.71 -0.83 15.87 15 Total: -1.00 -68.85 236.95 -0.07 -68.92 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.31 Total: 21.80 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 2.68 Total: -5.23 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -5.08 Total: -128.03 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -68.85 -0.07 -68.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100472523.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.550 kcal (2) G-P(sol) polarization free energy of solvation -68.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds