Wall clock time and date at job start Mon Mar 30 2020 01:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48494 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 10 14 14 N 1.30503 * 125.64775 * 304.69499 * 13 12 11 15 15 C 1.34131 * 109.25109 * 179.89118 * 14 13 12 16 16 C 1.34665 * 108.02505 * 0.36786 * 15 14 13 17 17 N 1.35042 * 125.65147 * 124.99690 * 13 12 11 18 18 H 0.97000 * 126.39564 * 359.97438 * 17 13 12 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 21 21 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 22 22 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 23 23 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 24 24 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 25 25 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 26 26 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 27 27 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 28 28 H 1.08000 * 125.98234 * 180.11206 * 15 14 13 29 29 H 1.07998 * 126.59444 * 179.80959 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4552 -0.0018 14 7 0.8182 -7.8122 0.8704 15 6 0.3597 -9.0333 0.5576 16 6 1.0084 -9.4521 -0.5457 17 7 1.8721 -8.4513 -0.9010 18 1 2.4794 -8.4567 -1.6574 19 1 -0.4851 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8719 -3.6045 0.8894 23 1 2.8719 -3.6044 -0.8905 24 1 0.8533 -5.0451 0.8886 25 1 0.8538 -5.0445 -0.8914 26 1 3.1011 -6.0919 -0.8918 27 1 3.1011 -6.0928 0.8882 28 1 -0.3944 -9.5857 1.0985 29 1 0.8730 -10.3958 -1.0530 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104400303.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:21 Heat of formation + Delta-G solvation = 27.812729 kcal Electronic energy + Delta-G solvation = -11332.805663 eV Core-core repulsion = 9255.859364 eV Total energy + Delta-G solvation = -2076.946299 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.94237 -35.31372 -32.84746 -32.42169 -30.63094 -27.94136 -25.13845 -22.27491 -21.54246 -20.26509 -19.90033 -17.76536 -16.15979 -15.22864 -14.63109 -14.45506 -13.97438 -13.82550 -13.15209 -12.60511 -12.34097 -11.69052 -11.49947 -10.95586 -10.51969 -10.49759 -10.39274 -9.97804 -9.89890 -9.56933 -9.25264 -9.00208 -8.30418 -8.28095 -5.93270 -3.95689 2.08767 3.14981 3.23494 3.36894 3.41131 3.43545 4.50504 4.59497 5.00129 5.24930 5.39057 5.41980 5.56519 5.73294 5.88839 6.09636 6.22735 6.34092 6.57203 6.78151 6.88915 7.04215 7.22750 7.39430 7.75996 7.92625 8.08264 8.19624 8.50229 9.11854 9.67814 11.18064 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.103901 B = 0.005492 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.422349 B = 5096.710651 C = 5240.178312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.036 4.036 13 C 0.222 3.778 14 N -0.488 5.488 15 C -0.028 4.028 16 C -0.071 4.071 17 N -0.571 5.571 18 H 0.417 0.583 19 H 0.260 0.740 20 H 0.014 0.986 21 H 0.017 0.983 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.167 0.833 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 -16.469 -2.657 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.075 4.075 13 C -0.042 4.042 14 N -0.208 5.208 15 C -0.177 4.177 16 C -0.204 4.204 17 N -0.174 5.174 18 H 0.254 0.746 19 H 0.070 0.930 20 H 0.033 0.967 21 H 0.035 0.965 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.184 0.816 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.769 -15.905 -1.949 16.461 hybrid contribution 0.868 0.255 -1.125 1.443 sum 4.636 -15.650 -3.074 16.610 Atomic orbital electron populations 1.69962 1.06046 1.26606 1.50926 1.25037 0.94840 0.99205 0.95466 0.86671 0.79577 0.83260 0.78552 1.20324 1.21333 1.20250 1.21259 0.92971 0.91233 1.50443 0.92795 1.19092 0.94065 0.91279 0.97263 1.21645 0.99094 0.93902 1.00152 1.21588 0.97406 0.93030 1.02609 1.20204 0.97146 0.87076 1.03093 1.23669 0.98991 0.93015 0.88532 1.70285 1.11381 1.13100 1.26007 1.22374 1.03527 0.94075 0.97674 1.22676 0.99145 0.96125 1.02499 1.43379 1.33355 1.15154 1.25543 0.74591 0.93003 0.96736 0.96486 0.93229 0.93597 0.91059 0.92669 0.90814 0.89364 0.81564 0.80978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.91 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.00 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 15 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 15 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 15 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 15 11 C -0.11 -1.92 5.17 -26.73 -0.14 -2.06 15 12 C -0.04 -0.51 5.84 -27.88 -0.16 -0.67 15 13 C 0.22 3.21 7.43 -155.41 -1.15 2.06 15 14 N -0.49 -8.07 11.22 -10.81 -0.12 -8.19 15 15 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 15 16 C -0.07 -0.75 12.04 -16.56 -0.20 -0.95 15 17 N -0.57 -6.27 6.15 -10.23 -0.06 -6.34 15 18 H 0.42 3.12 8.96 -40.82 -0.37 2.75 15 19 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 20 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 15 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 24 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.09 1.20 8.14 -51.93 -0.42 0.77 15 28 H 0.17 1.76 8.06 -52.49 -0.42 1.34 15 29 H 0.17 1.15 8.06 -52.49 -0.42 0.73 15 LS Contribution 254.82 15.07 3.84 3.84 Total: -1.00 -33.63 254.82 -7.32 -40.95 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.13 Total: -2.23 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.55 Total: -18.13 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.55 Total: -41.44 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.63 -7.32 -40.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104400303.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.764 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds