Wall clock time and date at job start Mon Mar 30 2020 02:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46844 * 110.99552 * 2 1 4 4 C 1.53038 * 109.52243 * 185.84132 * 3 2 1 5 5 C 1.53123 * 109.27881 * 300.82193 * 4 3 2 6 6 C 1.47205 * 109.51982 * 297.68435 * 5 4 3 7 7 N 4.25295 * 119.61264 * 62.08302 * 2 1 3 8 8 C 1.50701 * 109.52382 * 177.56238 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27909 * 8 5 4 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 5 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 5 13 13 H 1.48504 * 109.47209 * 89.99886 * 12 10 8 14 14 H 1.48501 * 109.47358 * 209.99377 * 12 10 8 15 15 H 1.48496 * 109.47341 * 329.99989 * 12 10 8 16 16 C 1.53120 * 109.15993 * 57.65189 * 5 4 3 17 17 C 1.46840 * 111.00167 * 124.20916 * 2 1 3 18 18 H 1.08995 * 109.47494 * 59.99841 * 1 2 3 19 19 H 1.09005 * 109.46767 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47363 * 299.99268 * 1 2 3 21 21 H 1.09004 * 109.46310 * 65.82608 * 3 2 1 22 22 H 1.08995 * 109.45659 * 305.85090 * 3 2 1 23 23 H 1.09008 * 109.50545 * 180.88291 * 4 3 2 24 24 H 1.09000 * 109.53748 * 60.77997 * 4 3 2 25 25 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 26 26 H 1.09002 * 109.50176 * 62.28639 * 16 5 4 27 27 H 1.08995 * 109.50072 * 182.40804 * 16 5 4 28 28 H 1.08992 * 109.46810 * 294.17744 * 17 2 1 29 29 H 1.09003 * 109.46101 * 54.16191 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1188 0.5371 1.0143 6 6 3.8093 1.2111 2.2859 7 7 3.5705 1.7311 3.2672 8 6 5.6133 0.4466 0.8431 9 1 6.0883 0.9106 -0.0087 10 6 6.3734 -0.2339 1.7704 11 7 5.7950 -0.7992 2.8075 12 14 8.2250 -0.3527 1.5540 13 1 8.8773 0.7969 2.2309 14 1 8.7130 -1.6212 2.1525 15 1 8.5569 -0.3283 0.1068 16 6 3.5182 -0.8714 1.0208 17 6 1.9953 -0.7707 1.1337 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5137 0.8900 21 1 1.7323 1.8608 0.9376 22 1 1.5633 1.9256 -0.8330 23 1 3.9098 2.3514 -0.1310 24 1 3.7819 0.8573 -1.0907 25 1 6.3297 -1.2783 3.4597 26 1 3.7814 -1.3835 0.0952 27 1 3.9099 -1.4301 1.8707 28 1 1.7325 -0.2709 2.0659 29 1 1.5636 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114980256.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:50 Heat of formation + Delta-G solvation = 18.856468 kcal Electronic energy + Delta-G solvation = -12525.337936 eV Core-core repulsion = 10448.003264 eV Total energy + Delta-G solvation = -2077.334672 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.67331 -35.18390 -33.42658 -31.58306 -30.00869 -27.17626 -24.36430 -22.30014 -22.02424 -19.92964 -17.04160 -15.60689 -14.76938 -14.46372 -14.33741 -13.80070 -13.26376 -13.05398 -12.36143 -11.84205 -11.79958 -11.43984 -11.22751 -11.08276 -11.01572 -10.72177 -10.57130 -10.34196 -10.15774 -9.94151 -9.20140 -8.99506 -8.60607 -7.81218 -6.20200 -4.33398 3.23967 3.31598 3.33638 4.24768 4.40284 4.48096 4.48808 5.09971 5.49104 5.57582 5.69568 5.80026 5.85994 6.08066 6.08535 6.14940 6.19195 6.41075 6.47994 6.62295 6.91019 7.12753 7.24654 7.50464 7.63042 7.67205 7.88385 8.06439 8.66598 9.27065 9.36267 10.83479 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.053408 B = 0.012113 C = 0.011848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.140829 B = 2310.927788 C = 2362.724884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.052 3.948 4 C -0.097 4.097 5 C 0.156 3.844 6 C 0.274 3.726 7 N -0.530 5.530 8 C -0.519 4.519 9 H 0.073 0.927 10 C 0.068 3.932 11 N -0.876 5.876 12 Si 0.902 3.098 13 H -0.280 1.280 14 H -0.284 1.284 15 H -0.269 1.269 16 C -0.097 4.097 17 C 0.049 3.951 18 H 0.062 0.938 19 H 0.063 0.937 20 H 0.017 0.983 21 H 0.025 0.975 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.267 0.733 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.023 0.977 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 -0.548 -6.406 8.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.076 4.076 4 C -0.136 4.136 5 C 0.152 3.848 6 C -0.042 4.042 7 N -0.207 5.207 8 C -0.557 4.557 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.512 5.512 12 Si 0.729 3.271 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.194 1.194 16 C -0.136 4.136 17 C -0.078 4.078 18 H 0.081 0.919 19 H 0.082 0.918 20 H 0.036 0.964 21 H 0.043 0.957 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.041 0.959 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.685 -0.106 -5.169 7.684 hybrid contribution 0.809 0.077 0.536 0.974 sum -4.876 -0.029 -4.633 6.726 Atomic orbital electron populations 1.22329 0.88790 1.01366 0.99860 1.62021 1.06259 1.13910 1.44211 1.22188 0.97119 0.88848 0.99399 1.21626 0.91991 1.00186 0.99762 1.16048 0.96364 0.90597 0.81808 1.30118 0.88597 0.90864 0.94609 1.80828 1.13988 1.13333 1.12561 1.20943 0.89112 1.35592 1.10080 0.90862 1.25076 0.99434 0.94440 0.94698 1.69836 1.36012 1.33756 1.11598 0.86420 0.84442 0.77598 0.78660 1.20616 1.21006 1.19369 1.21686 0.89684 0.98220 1.04026 1.22331 0.98506 0.96654 0.90320 0.91942 0.91845 0.96428 0.95684 0.91590 0.92098 0.90202 0.92316 0.91461 0.88192 0.95861 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.59 60.06 0.58 0.93 15 2 N -0.54 -9.40 4.91 -242.97 -1.19 -10.59 15 3 C 0.05 0.93 5.26 -3.83 -0.02 0.91 15 4 C -0.10 -1.88 4.80 -26.65 -0.13 -2.00 15 5 C 0.16 3.60 0.47 -158.32 -0.07 3.53 15 6 C 0.27 7.01 10.35 -20.76 -0.21 6.79 15 7 N -0.53 -14.32 18.54 42.15 0.78 -13.54 15 8 C -0.52 -13.03 7.99 -34.44 -0.28 -13.31 15 9 H 0.07 1.77 7.74 -52.49 -0.41 1.36 15 10 C 0.07 1.76 5.14 -17.82 -0.09 1.67 15 11 N -0.88 -23.75 10.45 55.43 0.58 -23.17 15 12 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 15 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 16 C -0.10 -2.12 4.60 -26.65 -0.12 -2.24 15 17 C 0.05 0.95 5.26 -3.84 -0.02 0.93 15 18 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 19 H 0.06 0.81 8.09 -51.93 -0.42 0.39 15 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 15 21 H 0.02 0.48 7.32 -51.93 -0.38 0.10 15 22 H 0.07 0.99 8.12 -51.93 -0.42 0.57 15 23 H 0.06 1.14 8.14 -51.92 -0.42 0.72 15 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 15 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 26 H 0.07 1.43 8.14 -51.93 -0.42 1.00 15 27 H 0.10 2.45 6.16 -51.93 -0.32 2.13 15 28 H 0.02 0.49 7.32 -51.93 -0.38 0.11 15 29 H 0.06 1.10 8.09 -51.93 -0.42 0.68 15 LS Contribution 240.07 15.07 3.62 3.62 Total: -1.00 -28.15 240.07 -5.60 -33.75 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.00 Total: -2.44 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.37 Total: -2.80 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.17 Total: -47.31 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.15 -5.60 -33.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114980256.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.604 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds