Wall clock time and date at job start Mon Mar 30 2020 02:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46844 * 110.99552 * 2 1 4 4 C 1.53038 * 109.52243 * 185.84132 * 3 2 1 5 5 C 1.53123 * 109.27881 * 300.82193 * 4 3 2 6 6 C 1.47205 * 109.51982 * 297.68435 * 5 4 3 7 7 N 4.25295 * 119.61264 * 62.08302 * 2 1 3 8 8 C 1.50701 * 109.52382 * 177.56238 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27909 * 8 5 4 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 5 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 5 13 13 H 1.48504 * 109.47209 * 89.99886 * 12 10 8 14 14 H 1.48501 * 109.47358 * 209.99377 * 12 10 8 15 15 H 1.48496 * 109.47341 * 329.99989 * 12 10 8 16 16 C 1.53120 * 109.15993 * 57.65189 * 5 4 3 17 17 C 1.46840 * 111.00167 * 124.20916 * 2 1 3 18 18 H 1.08995 * 109.47494 * 59.99841 * 1 2 3 19 19 H 1.09005 * 109.46767 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47363 * 299.99268 * 1 2 3 21 21 H 1.09004 * 109.46310 * 65.82608 * 3 2 1 22 22 H 1.08995 * 109.45659 * 305.85090 * 3 2 1 23 23 H 1.09008 * 109.50545 * 180.88291 * 4 3 2 24 24 H 1.09000 * 109.53748 * 60.77997 * 4 3 2 25 25 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 26 26 H 1.09002 * 109.50176 * 62.28639 * 16 5 4 27 27 H 1.08995 * 109.50072 * 182.40804 * 16 5 4 28 28 H 1.08992 * 109.46810 * 294.17744 * 17 2 1 29 29 H 1.09003 * 109.46101 * 54.16191 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1188 0.5371 1.0143 6 6 3.8093 1.2111 2.2859 7 7 3.5705 1.7311 3.2672 8 6 5.6133 0.4466 0.8431 9 1 6.0883 0.9106 -0.0087 10 6 6.3734 -0.2339 1.7704 11 7 5.7950 -0.7992 2.8075 12 14 8.2250 -0.3527 1.5540 13 1 8.8773 0.7969 2.2309 14 1 8.7130 -1.6212 2.1525 15 1 8.5569 -0.3283 0.1068 16 6 3.5182 -0.8714 1.0208 17 6 1.9953 -0.7707 1.1337 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5137 0.8900 21 1 1.7323 1.8608 0.9376 22 1 1.5633 1.9256 -0.8330 23 1 3.9098 2.3514 -0.1310 24 1 3.7819 0.8573 -1.0907 25 1 6.3297 -1.2783 3.4597 26 1 3.7814 -1.3835 0.0952 27 1 3.9099 -1.4301 1.8707 28 1 1.7325 -0.2709 2.0659 29 1 1.5636 -1.7716 1.1240 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114980256.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:50 Heat of formation + Delta-G solvation = 0.585510 kcal Electronic energy + Delta-G solvation = -12526.130224 eV Core-core repulsion = 10448.003264 eV Total energy + Delta-G solvation = -2078.126960 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.26900 -36.95623 -35.36044 -33.34227 -31.57716 -28.75923 -26.00060 -23.85298 -23.67054 -21.56896 -18.94043 -17.19710 -16.66722 -15.90634 -15.87314 -15.36304 -14.94733 -14.72413 -14.06436 -13.58963 -13.27837 -13.07674 -12.91390 -12.84891 -12.80128 -12.44668 -12.17848 -11.99819 -11.83555 -11.71828 -10.89360 -10.82106 -10.53248 -9.21972 -8.15717 -6.34575 1.46114 1.49049 1.58605 2.33464 2.40227 2.51413 3.08886 3.16864 3.89795 4.19051 4.20830 4.37981 4.43102 4.62502 4.74566 4.75828 4.82922 4.94536 5.05066 5.06339 5.32866 5.46647 5.56597 5.65798 5.92578 6.15231 6.25129 6.28770 6.70192 7.27351 7.37957 8.86101 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.053408 B = 0.012113 C = 0.011848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.140829 B = 2310.927788 C = 2362.724884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.056 3.944 4 C -0.092 4.092 5 C 0.142 3.858 6 C 0.282 3.718 7 N -0.566 5.566 8 C -0.528 4.528 9 H 0.082 0.918 10 C 0.022 3.978 11 N -0.906 5.906 12 Si 0.959 3.041 13 H -0.288 1.288 14 H -0.286 1.286 15 H -0.253 1.253 16 C -0.089 4.089 17 C 0.059 3.941 18 H 0.087 0.913 19 H 0.078 0.922 20 H 0.012 0.988 21 H 0.003 0.997 22 H 0.100 0.900 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.263 0.737 26 H 0.073 0.927 27 H 0.068 0.932 28 H -0.003 1.003 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 -0.554 -8.300 10.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.072 4.072 4 C -0.131 4.131 5 C 0.138 3.862 6 C -0.033 4.033 7 N -0.245 5.245 8 C -0.566 4.566 9 H 0.100 0.900 10 C -0.180 4.180 11 N -0.543 5.543 12 Si 0.785 3.215 13 H -0.214 1.214 14 H -0.211 1.211 15 H -0.177 1.177 16 C -0.129 4.129 17 C -0.069 4.069 18 H 0.105 0.895 19 H 0.097 0.903 20 H 0.030 0.970 21 H 0.022 0.978 22 H 0.119 0.881 23 H 0.083 0.917 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.016 0.984 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.125 -0.106 -7.086 9.367 hybrid contribution 0.915 0.085 1.111 1.442 sum -5.210 -0.022 -5.975 7.927 Atomic orbital electron populations 1.22450 0.86394 1.02782 1.00784 1.62038 1.08380 1.13423 1.42630 1.22186 0.96026 0.89280 0.99702 1.21600 0.93210 0.99836 0.98464 1.16407 0.96019 0.91729 0.82028 1.30765 0.87610 0.90063 0.94818 1.80802 1.15231 1.14764 1.13700 1.21348 0.90363 1.34878 1.10043 0.90023 1.25812 1.03250 0.94360 0.94570 1.69984 1.37151 1.34759 1.12407 0.85519 0.79826 0.76940 0.79242 1.21411 1.21124 1.17675 1.21505 0.91556 0.96979 1.02845 1.22165 0.96811 0.97916 0.90039 0.89463 0.90314 0.96961 0.97842 0.88132 0.91725 0.88773 0.92792 0.90846 0.91324 0.98433 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.59 127.69 1.22 1.82 15 2 N -0.54 -17.38 4.91 -922.62 -4.53 -21.91 15 3 C 0.06 1.84 5.26 86.33 0.45 2.29 15 4 C -0.09 -3.39 4.80 30.65 0.15 -3.25 15 5 C 0.14 6.49 0.47 -54.65 -0.03 6.47 15 6 C 0.28 14.55 10.35 89.44 0.93 15.48 15 7 N -0.57 -31.15 18.54 20.01 0.37 -30.78 15 8 C -0.53 -26.12 7.99 25.60 0.20 -25.91 15 9 H 0.08 3.82 7.74 -2.91 -0.02 3.79 15 10 C 0.02 1.11 5.14 84.65 0.44 1.54 15 11 N -0.91 -49.82 10.45 21.45 0.22 -49.60 15 12 Si 0.96 41.12 29.54 68.60 2.03 43.14 15 13 H -0.29 -12.60 7.11 99.48 0.71 -11.90 15 14 H -0.29 -12.19 7.11 99.48 0.71 -11.48 15 15 H -0.25 -10.11 7.11 99.48 0.71 -9.40 15 16 C -0.09 -3.87 4.60 30.65 0.14 -3.73 15 17 C 0.06 2.19 5.26 86.33 0.45 2.64 15 18 H 0.09 1.78 8.14 -2.39 -0.02 1.76 15 19 H 0.08 1.74 8.09 -2.38 -0.02 1.72 15 20 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 21 H 0.00 0.12 7.32 -2.39 -0.02 0.11 15 22 H 0.10 2.63 8.12 -2.39 -0.02 2.61 15 23 H 0.06 2.30 8.14 -2.38 -0.02 2.28 15 24 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 25 H 0.26 14.05 8.31 -92.71 -0.77 13.28 15 26 H 0.07 3.04 8.14 -2.39 -0.02 3.02 15 27 H 0.07 3.42 6.16 -2.39 -0.01 3.40 15 28 H 0.00 -0.11 7.32 -2.39 -0.02 -0.13 15 29 H 0.08 2.76 8.09 -2.39 -0.02 2.74 15 Total: -1.00 -59.70 240.07 3.17 -56.53 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.12 Total: 5.27 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 3.96 Total: -2.65 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -3.94 Total: -102.30 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -59.70 3.17 -56.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114980256.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.114 kcal (2) G-P(sol) polarization free energy of solvation -59.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds