Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47457 * 2 1 4 4 C 1.40124 * 125.79970 * 124.97202 * 3 2 1 5 5 C 1.35239 * 107.98288 * 179.76072 * 4 3 2 6 6 C 1.50707 * 126.20748 * 180.26386 * 5 4 3 7 7 C 1.52997 * 109.47418 * 85.15287 * 6 5 4 8 8 N 1.36280 * 107.58334 * 0.38859 * 5 4 3 9 9 C 1.37401 * 126.11454 * 179.87822 * 8 5 4 10 10 H 1.07998 * 120.00308 * 6.21988 * 9 8 5 11 11 C 1.38989 * 119.99303 * 186.22650 * 9 8 5 12 12 N 1.31290 * 119.99786 * 183.08385 * 11 9 8 13 13 Si 1.86800 * 120.00612 * 3.34739 * 11 9 8 14 14 H 1.48496 * 109.47296 * 179.72971 * 13 11 9 15 15 H 1.48499 * 109.47144 * 299.73394 * 13 11 9 16 16 H 1.48507 * 109.46657 * 59.73169 * 13 11 9 17 17 N 1.30932 * 125.79305 * 304.97559 * 3 2 1 18 18 H 1.08994 * 109.47266 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46924 * 300.00608 * 1 2 3 20 20 H 1.09005 * 109.47106 * 60.00011 * 1 2 3 21 21 H 1.09004 * 109.47615 * 239.99943 * 2 1 3 22 22 H 1.08996 * 109.47264 * 119.99723 * 2 1 3 23 23 H 1.08003 * 126.01155 * 0.02562 * 4 3 2 24 24 H 1.09007 * 109.46820 * 205.15192 * 6 5 4 25 25 H 1.08996 * 109.46913 * 325.14719 * 6 5 4 26 26 H 1.09007 * 109.47047 * 299.99766 * 7 6 5 27 27 H 1.09001 * 109.47196 * 59.99498 * 7 6 5 28 28 H 1.09000 * 109.47028 * 179.97438 * 7 6 5 29 29 H 0.97005 * 119.99699 * 355.11475 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9198 1.9764 0.9313 5 6 3.1296 3.2679 0.5891 6 6 4.0205 4.2465 1.3103 7 6 5.4578 4.0927 0.8091 8 7 2.3871 3.5246 -0.5244 9 6 2.3163 4.7235 -1.1920 10 1 2.9586 5.5418 -0.9019 11 6 1.4180 4.8829 -2.2405 12 7 1.3923 6.0074 -2.9176 13 14 0.2421 3.5001 -2.6816 14 1 -0.6100 3.9201 -3.8230 15 1 1.0183 2.2925 -3.0614 16 1 -0.6169 3.1886 -1.5110 17 7 1.7137 2.3458 -0.8702 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 3.3622 1.4624 1.7718 24 1 3.6752 5.2623 1.1176 25 1 3.9859 4.0480 2.3814 26 1 5.8031 3.0769 1.0018 27 1 5.4923 4.2911 -0.2621 28 1 6.1020 4.8008 1.3304 29 1 1.9496 6.7522 -2.6423 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132491366.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = 40.953378 kcal Electronic energy + Delta-G solvation = -12281.065016 eV Core-core repulsion = 10204.688538 eV Total energy + Delta-G solvation = -2076.376478 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.99137 -34.35936 -33.38175 -32.35462 -29.90626 -27.91706 -24.87167 -22.89962 -22.68811 -19.50260 -18.75025 -17.40813 -15.64894 -14.23096 -13.96088 -13.86036 -13.63898 -13.28360 -12.89453 -12.48670 -12.19247 -11.88765 -11.48803 -11.16209 -10.83328 -10.69828 -10.57761 -10.48778 -10.11981 -9.80840 -9.40222 -8.39341 -8.07625 -7.46837 -7.23821 -4.41733 3.06250 3.54500 3.72526 3.81362 3.96409 4.25044 4.38736 4.99224 5.47932 5.57276 5.68337 5.71298 5.89253 5.92811 6.10329 6.26805 6.29128 6.31467 6.42315 6.53950 6.69742 6.70332 6.76823 6.92632 7.33532 7.50548 7.78568 8.12731 8.44253 9.06929 9.32521 10.20365 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.023575 B = 0.021612 C = 0.011782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.436075 B = 1295.274262 C = 2375.868141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 C 0.016 3.984 4 C -0.293 4.293 5 C -0.007 4.007 6 C -0.040 4.040 7 C -0.140 4.140 8 N -0.156 5.156 9 C -0.381 4.381 10 H 0.112 0.888 11 C 0.037 3.963 12 N -0.839 5.839 13 Si 1.122 2.878 14 H -0.316 1.316 15 H -0.271 1.271 16 H -0.286 1.286 17 N -0.357 5.357 18 H 0.049 0.951 19 H 0.051 0.949 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 -6.062 5.961 8.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.136 4.136 4 C -0.324 4.324 5 C -0.139 4.139 6 C -0.079 4.079 7 C -0.198 4.198 8 N 0.078 4.922 9 C -0.513 4.513 10 H 0.130 0.870 11 C -0.177 4.177 12 N -0.467 5.467 13 Si 0.953 3.047 14 H -0.247 1.247 15 H -0.198 1.198 16 H -0.213 1.213 17 N -0.191 5.191 18 H 0.068 0.932 19 H 0.071 0.929 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.138 0.862 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.426 -6.120 3.807 7.220 hybrid contribution 1.863 0.602 1.871 2.708 sum 2.289 -5.518 5.678 8.242 Atomic orbital electron populations 1.21710 0.95678 1.00391 1.02448 1.19696 0.95308 0.90390 1.01397 1.21579 1.00667 0.95461 0.95851 1.20364 1.11375 0.94633 1.06037 1.20595 1.03320 0.96493 0.93496 1.19792 0.92988 0.97181 0.97931 1.21694 0.95695 1.01079 1.01378 1.45020 1.24936 1.07035 1.15173 1.21116 1.25004 0.87859 1.17292 0.87032 1.26936 0.97335 1.02473 0.90962 1.70905 1.37171 1.03224 1.35390 0.82563 0.74417 0.72799 0.74899 1.24740 1.19805 1.21315 1.76049 1.25327 0.92289 1.25481 0.93232 0.92944 0.92391 0.91758 0.91351 0.86182 0.91689 0.91286 0.92801 0.92806 0.93256 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.87 37.16 0.37 -2.06 15 2 C -0.03 -0.52 6.51 -27.88 -0.18 -0.70 15 3 C 0.02 0.37 6.49 -82.27 -0.53 -0.16 15 4 C -0.29 -6.50 10.64 -39.94 -0.42 -6.93 15 5 C -0.01 -0.17 6.18 -81.68 -0.50 -0.67 15 6 C -0.04 -0.76 6.17 -27.88 -0.17 -0.93 15 7 C -0.14 -2.35 9.89 37.16 0.37 -1.99 15 8 N -0.16 -4.21 3.67 -7.83 -0.03 -4.24 15 9 C -0.38 -10.63 10.28 -14.78 -0.15 -10.79 15 10 H 0.11 3.05 7.26 -52.49 -0.38 2.67 15 11 C 0.04 1.04 5.50 -17.50 -0.10 0.94 15 12 N -0.84 -23.87 13.68 55.49 0.76 -23.11 15 13 Si 1.12 29.09 25.79 -169.99 -4.38 24.71 15 14 H -0.32 -8.02 7.11 56.52 0.40 -7.61 15 15 H -0.27 -7.07 6.71 56.52 0.38 -6.69 15 16 H -0.29 -7.43 7.11 56.52 0.40 -7.03 15 17 N -0.36 -9.46 7.13 33.74 0.24 -9.22 15 18 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.06 1.09 8.14 -51.93 -0.42 0.66 15 21 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.07 1.04 8.12 -51.93 -0.42 0.62 15 23 H 0.12 2.30 8.06 -52.48 -0.42 1.88 15 24 H 0.06 1.27 7.25 -51.92 -0.38 0.90 15 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.05 0.86 8.14 -51.92 -0.42 0.44 15 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 15 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 29 H 0.28 7.54 8.72 -40.82 -0.36 7.18 15 LS Contribution 247.27 15.07 3.73 3.73 Total: -1.00 -30.31 247.27 -5.18 -35.49 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -4.16 Total: -4.07 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -1.33 Total: -23.29 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.97 Total: -36.57 kcal Atomic # 14 Polarization: 29.09 SS G_CDS: -4.38 Total: 24.71 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.31 -5.18 -35.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132491366.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.442 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds