Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 C 1.40895 * 126.28936 * 89.99969 * 14 13 12 16 16 C 1.34847 * 107.41325 * 179.97438 * 15 14 13 17 17 N 1.36338 * 108.22160 * 359.97438 * 16 15 14 18 18 H 0.97004 * 125.63231 * 179.97438 * 17 16 15 19 19 C 1.34849 * 126.29303 * 269.69542 * 14 13 12 20 20 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 25 25 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 26 26 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 27 27 H 1.07997 * 126.29119 * 359.94428 * 15 14 13 28 28 H 1.08008 * 125.88757 * 180.02562 * 16 15 14 29 29 H 1.08005 * 125.88854 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 6 1.8020 -1.2075 -4.5022 16 6 2.6401 -1.7315 -5.4195 17 7 3.9151 -1.3933 -5.0745 18 1 4.7167 -1.6403 -5.5616 19 6 3.8767 -0.6476 -3.9338 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7089 1.1611 3.4845 24 1 2.9172 -1.1204 -1.0288 25 1 1.0871 0.6165 -2.5525 26 1 2.7588 1.0464 -2.1181 27 1 0.7259 -1.2979 -4.4940 28 1 2.3512 -2.3173 -6.2797 29 1 4.7309 -0.2315 -3.4203 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134974912.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = 42.811093 kcal Electronic energy + Delta-G solvation = -11737.191367 eV Core-core repulsion = 9660.895446 eV Total energy + Delta-G solvation = -2076.295921 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.68887 -35.75959 -32.77145 -30.81994 -29.07287 -27.54500 -25.22656 -23.76064 -20.46036 -19.64841 -18.97072 -17.89437 -16.19818 -14.79025 -14.02959 -13.91072 -13.46751 -13.35985 -13.09234 -12.52740 -12.12506 -11.74982 -11.18435 -10.98554 -10.71436 -10.69725 -10.14749 -10.02567 -9.87508 -8.75685 -8.41246 -8.33404 -7.82184 -7.05251 -5.95101 -4.01068 2.56532 3.34710 3.35898 3.39635 3.43187 3.60235 4.46799 5.34587 5.35780 5.46798 5.66723 5.86705 5.90646 6.25765 6.50177 6.53529 6.79018 7.00236 7.25883 7.32276 7.35943 7.46507 7.63711 7.84542 7.86990 8.01657 8.38226 8.55373 8.82217 9.11682 9.64414 11.11185 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.064880 B = 0.007576 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.463376 B = 3694.934422 C = 3925.822804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.209 3.791 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.683 5.683 13 C 0.128 3.872 14 C -0.144 4.144 15 C -0.179 4.179 16 C -0.031 4.031 17 N -0.566 5.566 18 H 0.409 0.591 19 C -0.022 4.022 20 H 0.079 0.921 21 H 0.004 0.996 22 H 0.030 0.970 23 H 0.260 0.740 24 H 0.329 0.671 25 H 0.067 0.933 26 H 0.019 0.981 27 H 0.132 0.868 28 H 0.157 0.843 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 -2.578 -12.489 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.314 5.314 13 C -0.002 4.002 14 C -0.151 4.151 15 C -0.205 4.205 16 C -0.161 4.161 17 N -0.161 5.161 18 H 0.244 0.756 19 C -0.153 4.153 20 H 0.098 0.902 21 H 0.023 0.977 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.146 0.854 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.150 0.850 28 H 0.175 0.825 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.100 -2.730 -12.569 13.500 hybrid contribution 1.397 -0.063 0.878 1.651 sum 5.497 -2.792 -11.691 13.217 Atomic orbital electron populations 1.21703 0.97973 0.99272 0.99241 1.19117 0.92634 0.92295 0.85762 0.98291 1.21253 1.31286 1.12382 0.90532 0.92356 1.24923 0.95137 0.95025 0.98969 1.69898 1.36752 1.22931 1.23424 0.86594 0.79010 0.79805 0.82152 1.21357 1.20229 1.20407 1.60723 1.32070 1.33079 1.05493 1.20227 0.99076 0.92511 0.88351 1.19672 0.92323 1.04449 0.98684 1.20838 0.99109 1.03924 0.96587 1.21738 0.83518 1.07786 1.03080 1.41870 1.07928 1.43523 1.22786 0.75594 1.21668 0.98792 1.03347 0.91488 0.90243 0.97682 0.95038 0.92961 0.85447 0.91475 0.96255 0.84982 0.82522 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 9.19 37.16 0.34 -2.88 15 2 C 0.21 5.56 2.60 -68.87 -0.18 5.38 15 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.42 15 4 C -0.52 -14.62 8.59 -34.44 -0.30 -14.92 15 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 15 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -26.05 11.32 55.43 0.63 -25.43 15 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 15 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 12 N -0.68 -15.66 6.29 -109.22 -0.69 -16.35 15 13 C 0.13 2.55 5.98 -4.97 -0.03 2.52 15 14 C -0.14 -2.49 5.65 -104.82 -0.59 -3.08 15 15 C -0.18 -2.85 10.81 -39.78 -0.43 -3.28 15 16 C -0.03 -0.40 11.94 -16.75 -0.20 -0.60 15 17 N -0.57 -6.68 6.07 -12.85 -0.08 -6.76 15 18 H 0.41 3.28 8.96 -40.82 -0.37 2.92 15 19 C -0.02 -0.32 11.85 -16.75 -0.20 -0.52 15 20 H 0.08 2.22 6.07 -51.93 -0.32 1.91 15 21 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 15 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 24 H 0.33 7.42 8.22 -39.30 -0.32 7.10 15 25 H 0.07 1.36 7.44 -51.93 -0.39 0.98 15 26 H 0.02 0.38 8.05 -51.93 -0.42 -0.03 15 27 H 0.13 2.03 8.06 -52.49 -0.42 1.61 15 28 H 0.16 1.47 8.06 -52.48 -0.42 1.05 15 29 H 0.16 1.99 8.06 -52.48 -0.42 1.56 15 LS Contribution 248.70 15.07 3.75 3.75 Total: -1.00 -31.01 248.70 -6.92 -37.93 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -3.83 Total: 5.94 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.68 Total: -15.74 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.14 Total: -48.54 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.01 -6.92 -37.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134974912.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.737 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds