Wall clock time and date at job start Mon Mar 30 2020 01:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00109 * 2 1 4 4 C 1.53002 * 109.47243 * 125.00079 * 3 2 1 5 5 H 1.08998 * 110.01992 * 305.13482 * 4 3 2 6 6 C 1.53911 * 110.00031 * 183.80779 * 4 3 2 7 7 C 1.54385 * 106.04798 * 240.20939 * 6 4 3 8 8 H 1.09002 * 110.70511 * 95.63110 * 7 6 4 9 9 C 1.50705 * 110.57924 * 218.45252 * 7 6 4 10 10 H 1.08003 * 119.99679 * 355.75234 * 9 7 6 11 11 C 1.37876 * 120.00185 * 175.74952 * 9 7 6 12 12 N 1.31516 * 120.00012 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00031 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46838 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47205 * 119.99890 * 13 11 9 16 16 H 1.48493 * 109.47198 * 240.00160 * 13 11 9 17 17 C 1.54896 * 103.71875 * 337.01378 * 7 6 4 18 18 C 1.51867 * 109.99332 * 66.45515 * 4 3 2 19 19 O 1.20759 * 127.60620 * 323.83871 * 18 4 3 20 20 H 1.08005 * 120.00005 * 179.97438 * 1 2 3 21 21 H 1.08000 * 119.99830 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99830 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.46977 * 5.00573 * 3 2 1 24 24 H 1.08995 * 109.47466 * 245.00363 * 3 2 1 25 25 H 1.09007 * 110.13655 * 121.06649 * 6 4 3 26 26 H 1.08997 * 110.19314 * 359.38488 * 6 4 3 27 27 H 0.97003 * 119.99703 * 179.97438 * 12 11 9 28 28 H 1.09002 * 110.72063 * 279.38899 * 17 7 6 29 29 H 1.09001 * 110.72641 * 156.11352 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 1 2.4976 1.1453 2.1111 6 6 3.7425 2.6982 1.2492 7 6 5.2511 2.4049 1.1017 8 1 5.5667 2.5212 0.0649 9 6 6.0563 3.3052 2.0029 10 1 5.5626 4.0733 2.5798 11 6 7.4233 3.1483 2.0911 12 7 8.0245 2.2132 1.3884 13 14 8.4213 4.2637 3.2088 14 1 7.5149 5.2263 3.8847 15 1 9.1224 3.4433 4.2289 16 1 9.4200 5.0086 2.4009 17 6 5.3835 0.9278 1.5486 18 6 4.1185 0.2867 0.9879 19 8 4.0046 -0.8094 0.4939 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8499 -0.9353 -0.0004 23 1 1.3585 2.1316 0.0897 24 1 2.6212 1.4026 -0.9313 25 1 3.5452 3.1760 2.2089 26 1 3.4034 3.3385 0.4349 27 1 8.9863 2.1031 1.4502 28 1 5.4037 0.8541 2.6359 29 1 6.2726 0.4713 1.1135 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144258719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:12 Heat of formation + Delta-G solvation = -40.267107 kcal Electronic energy + Delta-G solvation = -12021.462598 eV Core-core repulsion = 9909.271384 eV Total energy + Delta-G solvation = -2112.191213 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.18143 -35.85151 -34.47648 -32.23751 -29.27739 -26.72572 -25.15187 -23.02171 -19.88735 -19.15831 -18.37149 -16.65799 -15.34712 -15.04460 -14.41576 -14.23295 -13.63456 -13.06106 -12.96287 -12.23481 -12.07262 -11.84238 -11.44377 -11.02551 -10.88423 -10.70247 -10.53458 -10.33217 -9.78739 -9.36192 -9.19527 -8.98595 -8.56670 -8.26701 -6.09272 -4.14388 2.48974 2.74222 3.25871 3.34607 3.37567 4.37266 4.90108 5.16989 5.23110 5.35544 5.50961 5.59636 5.85161 5.88320 6.09785 6.20027 6.31163 6.50542 6.62332 6.81487 6.85423 6.89664 7.00136 7.03789 7.52457 7.69133 7.89232 8.27537 8.35111 8.88894 9.51408 10.99600 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.074819 B = 0.008810 C = 0.008162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.146145 B = 3177.504394 C = 3429.676083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.082 4.082 4 C -0.148 4.148 5 H 0.094 0.906 6 C -0.109 4.109 7 C 0.053 3.947 8 H 0.035 0.965 9 C -0.516 4.516 10 H 0.061 0.939 11 C 0.062 3.938 12 N -0.888 5.888 13 Si 0.892 3.108 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.157 4.157 18 C 0.365 3.635 19 O -0.469 6.469 20 H 0.091 0.909 21 H 0.091 0.909 22 H 0.120 0.880 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.261 0.739 28 H 0.088 0.912 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 -0.751 -0.281 9.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.160 4.160 3 C -0.119 4.119 4 C -0.167 4.167 5 H 0.112 0.888 6 C -0.147 4.147 7 C 0.035 3.965 8 H 0.053 0.947 9 C -0.554 4.554 10 H 0.079 0.921 11 C -0.140 4.140 12 N -0.525 5.525 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.195 4.195 18 C 0.243 3.757 19 O -0.344 6.344 20 H 0.110 0.890 21 H 0.109 0.891 22 H 0.138 0.862 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.948 -1.386 -0.576 9.073 hybrid contribution 0.641 0.603 0.671 1.107 sum -8.308 -0.782 0.095 8.345 Atomic orbital electron populations 1.23741 0.95903 1.01174 1.04320 1.23346 0.95916 0.99804 0.96930 1.20764 0.97531 0.95121 0.98497 1.22408 0.96586 0.98553 0.99116 0.88794 1.22304 0.98114 0.92894 1.01339 1.19381 0.89257 0.90485 0.97402 0.94699 1.21171 0.91815 1.16682 1.25736 0.92105 1.25025 0.97981 0.95340 0.95642 1.69961 1.09819 1.32289 1.40476 0.86530 0.80179 0.80695 0.80579 1.19707 1.21014 1.21019 1.23133 0.95238 0.99900 1.01266 1.25937 0.93338 0.84756 0.71665 1.90246 1.86357 1.21366 1.36417 0.89018 0.89052 0.86176 0.91341 0.90884 0.91599 0.92701 0.92885 0.89436 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.76 14.32 29.02 0.42 -2.34 15 2 C -0.14 -2.15 8.99 -36.03 -0.32 -2.47 15 3 C -0.08 -1.27 4.88 -27.88 -0.14 -1.40 15 4 C -0.15 -2.57 2.86 -90.72 -0.26 -2.82 15 5 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 6 C -0.11 -2.06 6.06 -25.53 -0.15 -2.22 15 7 C 0.05 1.25 2.82 -90.04 -0.25 1.00 15 8 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 9 C -0.52 -13.37 8.50 -34.44 -0.29 -13.67 15 10 H 0.06 1.54 7.58 -52.48 -0.40 1.14 15 11 C 0.06 1.66 5.33 -17.82 -0.09 1.57 15 12 N -0.89 -24.71 12.02 55.43 0.67 -24.04 15 13 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 15 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 17 C -0.16 -3.58 5.50 -25.99 -0.14 -3.73 15 18 C 0.37 7.46 7.24 -27.56 -0.20 7.26 15 19 O -0.47 -10.25 15.80 6.00 0.09 -10.15 15 20 H 0.09 1.05 8.06 -52.48 -0.42 0.63 15 21 H 0.09 1.06 7.84 -52.49 -0.41 0.65 15 22 H 0.12 2.01 6.36 -52.49 -0.33 1.68 15 23 H 0.07 0.93 7.79 -51.93 -0.40 0.53 15 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.07 1.22 7.69 -51.93 -0.40 0.82 15 26 H 0.05 0.96 7.68 -51.93 -0.40 0.56 15 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 28 H 0.09 1.99 8.05 -51.93 -0.42 1.57 15 29 H 0.09 2.29 7.39 -51.93 -0.38 1.91 15 LS Contribution 246.34 15.07 3.71 3.71 Total: -1.00 -27.46 246.34 -5.96 -33.42 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.97 Total: 0.39 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -1.44 Total: -18.82 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.67 Total: -24.04 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.46 -5.96 -33.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144258719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.846 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds