Wall clock time and date at job start Mon Mar 30 2020 01:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50696 * 120.00109 * 2 1 4 4 C 1.53002 * 109.47243 * 125.00079 * 3 2 1 5 5 H 1.08998 * 110.01992 * 305.13482 * 4 3 2 6 6 C 1.53911 * 110.00031 * 183.80779 * 4 3 2 7 7 C 1.54385 * 106.04798 * 240.20939 * 6 4 3 8 8 H 1.09002 * 110.70511 * 95.63110 * 7 6 4 9 9 C 1.50705 * 110.57924 * 218.45252 * 7 6 4 10 10 H 1.08003 * 119.99679 * 355.75234 * 9 7 6 11 11 C 1.37876 * 120.00185 * 175.74952 * 9 7 6 12 12 N 1.31516 * 120.00012 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00031 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46838 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47205 * 119.99890 * 13 11 9 16 16 H 1.48493 * 109.47198 * 240.00160 * 13 11 9 17 17 C 1.54896 * 103.71875 * 337.01378 * 7 6 4 18 18 C 1.51867 * 109.99332 * 66.45515 * 4 3 2 19 19 O 1.20759 * 127.60620 * 323.83871 * 18 4 3 20 20 H 1.08005 * 120.00005 * 179.97438 * 1 2 3 21 21 H 1.08000 * 119.99830 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99830 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.46977 * 5.00573 * 3 2 1 24 24 H 1.08995 * 109.47466 * 245.00363 * 3 2 1 25 25 H 1.09007 * 110.13655 * 121.06649 * 6 4 3 26 26 H 1.08997 * 110.19314 * 359.38488 * 6 4 3 27 27 H 0.97003 * 119.99703 * 179.97438 * 12 11 9 28 28 H 1.09002 * 110.72063 * 279.38899 * 17 7 6 29 29 H 1.09001 * 110.72641 * 156.11352 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 1 2.4976 1.1453 2.1111 6 6 3.7425 2.6982 1.2492 7 6 5.2511 2.4049 1.1017 8 1 5.5667 2.5212 0.0649 9 6 6.0563 3.3052 2.0029 10 1 5.5626 4.0733 2.5798 11 6 7.4233 3.1483 2.0911 12 7 8.0245 2.2132 1.3884 13 14 8.4213 4.2637 3.2088 14 1 7.5149 5.2263 3.8847 15 1 9.1224 3.4433 4.2289 16 1 9.4200 5.0086 2.4009 17 6 5.3835 0.9278 1.5486 18 6 4.1185 0.2867 0.9879 19 8 4.0046 -0.8094 0.4939 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8499 -0.9353 -0.0004 23 1 1.3585 2.1316 0.0897 24 1 2.6212 1.4026 -0.9313 25 1 3.5452 3.1760 2.2089 26 1 3.4034 3.3385 0.4349 27 1 8.9863 2.1031 1.4502 28 1 5.4037 0.8541 2.6359 29 1 6.2726 0.4713 1.1135 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144258719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:12 Heat of formation + Delta-G solvation = -54.999252 kcal Electronic energy + Delta-G solvation = -12022.101432 eV Core-core repulsion = 9909.271384 eV Total energy + Delta-G solvation = -2112.830047 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.81712 -37.50917 -35.87231 -34.05636 -30.79582 -28.55586 -26.73191 -24.65830 -21.41504 -20.52731 -19.95776 -18.58449 -16.86302 -16.62802 -16.17197 -15.93856 -15.13746 -14.64862 -14.30531 -14.07001 -13.63819 -13.29308 -12.94690 -12.82533 -12.47758 -12.34505 -12.28900 -11.76776 -11.46559 -11.10509 -10.99028 -10.55552 -10.16399 -9.98762 -8.11963 -6.23658 1.04551 1.43712 1.46016 1.46772 1.57207 2.44873 3.18928 3.37061 3.85573 3.99697 4.17656 4.32844 4.48670 4.61342 4.74592 4.78523 4.90796 5.01387 5.10756 5.20737 5.25359 5.31541 5.61817 5.77205 5.82690 5.90710 5.95021 6.31488 6.66357 6.88511 7.45924 8.96410 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.074819 B = 0.008810 C = 0.008162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.146145 B = 3177.504394 C = 3429.676083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.174 4.174 3 C -0.076 4.076 4 C -0.133 4.133 5 H 0.118 0.882 6 C -0.098 4.098 7 C 0.044 3.956 8 H 0.003 0.997 9 C -0.526 4.526 10 H 0.067 0.933 11 C 0.010 3.990 12 N -0.922 5.922 13 Si 0.956 3.044 14 H -0.260 1.260 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.155 4.155 18 C 0.369 3.631 19 O -0.485 6.485 20 H 0.105 0.895 21 H 0.112 0.888 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.260 0.740 28 H 0.086 0.914 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 0.310 0.453 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.192 4.192 3 C -0.113 4.113 4 C -0.151 4.151 5 H 0.136 0.864 6 C -0.135 4.135 7 C 0.025 3.975 8 H 0.021 0.979 9 C -0.564 4.564 10 H 0.086 0.914 11 C -0.189 4.189 12 N -0.562 5.562 13 Si 0.782 3.218 14 H -0.184 1.184 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.194 4.194 18 C 0.248 3.752 19 O -0.361 6.361 20 H 0.123 0.877 21 H 0.130 0.870 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.088 -0.315 0.160 11.094 hybrid contribution 1.274 0.240 0.414 1.361 sum -9.814 -0.076 0.574 9.831 Atomic orbital electron populations 1.23998 0.94992 1.02831 1.00268 1.23149 0.96756 0.98639 1.00673 1.20726 0.97397 0.96503 0.96699 1.22291 0.95764 0.95757 1.01320 0.86434 1.22188 0.94556 0.94169 1.02597 1.19348 0.92512 0.90505 0.95122 0.97874 1.21579 0.92304 1.16872 1.25655 0.91444 1.25829 0.99321 0.96660 0.97066 1.70108 1.09886 1.34006 1.42162 0.85527 0.78654 0.78966 0.78651 1.18419 1.21039 1.21130 1.22991 0.95460 0.99917 1.01004 1.25949 0.93436 0.85034 0.70826 1.90244 1.86569 1.22298 1.37002 0.87666 0.86983 0.88550 0.88452 0.92182 0.90544 0.90996 0.93114 0.89634 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.03 14.32 67.78 0.97 -3.06 15 2 C -0.17 -4.86 8.99 25.65 0.23 -4.63 15 3 C -0.08 -2.15 4.88 29.85 0.15 -2.01 15 4 C -0.13 -4.32 2.86 -10.86 -0.03 -4.36 15 5 H 0.12 3.37 8.14 -2.39 -0.02 3.35 15 6 C -0.10 -3.50 6.06 31.37 0.19 -3.31 15 7 C 0.04 2.08 2.82 -10.42 -0.03 2.05 15 8 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 9 C -0.53 -27.22 8.50 25.60 0.22 -27.01 15 10 H 0.07 3.33 7.58 -2.91 -0.02 3.31 15 11 C 0.01 0.54 5.33 84.65 0.45 0.99 15 12 N -0.92 -52.85 12.02 21.45 0.26 -52.59 15 13 Si 0.96 42.14 29.54 68.60 2.03 44.16 15 14 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 15 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 16 H -0.29 -12.53 7.11 99.48 0.71 -11.83 15 17 C -0.16 -7.27 5.50 31.08 0.17 -7.10 15 18 C 0.37 15.09 7.24 30.05 0.22 15.31 15 19 O -0.48 -21.47 15.80 -1.45 -0.02 -21.49 15 20 H 0.11 2.01 8.06 -2.91 -0.02 1.99 15 21 H 0.11 2.02 7.84 -2.91 -0.02 1.99 15 22 H 0.10 3.16 6.36 -2.91 -0.02 3.14 15 23 H 0.10 2.21 7.79 -2.39 -0.02 2.19 15 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.08 2.60 7.69 -2.38 -0.02 2.58 15 26 H 0.07 2.34 7.68 -2.39 -0.02 2.32 15 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 15 28 H 0.09 3.97 8.05 -2.39 -0.02 3.95 15 29 H 0.05 2.88 7.39 -2.39 -0.02 2.86 15 Total: -1.00 -59.54 246.34 5.91 -53.64 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.11 Total: 9.40 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 2.53 Total: -33.12 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.26 Total: -52.59 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.02 Total: -21.49 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -59.54 5.91 -53.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144258719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.363 kcal (2) G-P(sol) polarization free energy of solvation -59.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds