Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00303 * 2 1 4 4 C 1.52995 * 109.47506 * 124.99759 * 3 2 1 5 5 H 1.09001 * 109.97435 * 306.27176 * 4 3 2 6 6 C 1.54278 * 109.98429 * 184.99759 * 4 3 2 7 7 C 1.54986 * 103.88402 * 217.45612 * 6 4 3 8 8 H 1.09008 * 110.83030 * 278.95093 * 7 6 4 9 9 C 1.50694 * 110.83569 * 155.37143 * 7 6 4 10 10 H 1.07998 * 119.99756 * 359.97438 * 9 7 6 11 11 C 1.37875 * 120.00306 * 179.97438 * 9 7 6 12 12 N 1.31517 * 119.99815 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 120.00319 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47186 * 90.00231 * 13 11 9 15 15 H 1.48498 * 109.47615 * 209.99989 * 13 11 9 16 16 H 1.48506 * 109.47229 * 330.00501 * 13 11 9 17 17 C 1.55286 * 102.15427 * 37.07245 * 7 6 4 18 18 C 1.51453 * 109.98238 * 67.58153 * 4 3 2 19 19 O 1.20756 * 126.34327 * 298.97220 * 18 4 3 20 20 H 1.07996 * 120.00184 * 180.02562 * 1 2 3 21 21 H 1.08003 * 119.99720 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.00110 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46843 * 4.99530 * 3 2 1 24 24 H 1.09000 * 109.46673 * 244.99979 * 3 2 1 25 25 H 1.09002 * 110.57092 * 336.09719 * 6 4 3 26 26 H 1.09003 * 110.56546 * 98.81655 * 6 4 3 27 27 H 0.97005 * 119.99884 * 180.02562 * 12 11 9 28 28 H 1.08991 * 110.42167 * 203.64983 * 17 7 6 29 29 H 1.09002 * 110.52466 * 81.20832 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 2.5002 1.1255 2.1084 6 6 3.7220 2.7119 1.2668 7 6 5.1722 2.3787 1.7003 8 1 5.2274 2.2166 2.7768 9 6 6.1232 3.4661 1.2710 10 1 5.7522 4.3275 0.7356 11 6 7.4668 3.3612 1.5619 12 7 7.9187 2.3120 2.2135 13 14 8.6457 4.7087 1.0292 14 1 8.7472 5.7304 2.1022 15 1 9.9862 4.1222 0.7760 16 1 8.1409 5.3451 -0.2140 17 6 5.4496 1.0603 0.9280 18 6 4.1311 0.3086 0.9749 19 8 3.9838 -0.8852 0.8676 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9354 0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3586 2.1316 0.0895 24 1 2.6213 1.4025 -0.9314 25 1 3.7165 3.2033 0.2938 26 1 3.2333 3.3377 2.0135 27 1 8.8640 2.2384 2.4185 28 1 6.2327 0.4868 1.4237 29 1 5.7299 1.2734 -0.1035 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144259130.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = -57.590700 kcal Electronic energy + Delta-G solvation = -11997.359985 eV Core-core repulsion = 9884.417565 eV Total energy + Delta-G solvation = -2112.942421 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.82703 -37.52031 -35.85584 -34.06276 -30.80989 -28.46488 -26.81918 -24.53728 -21.64424 -20.57712 -19.78766 -18.35294 -17.39723 -16.67123 -16.02191 -15.73033 -15.22713 -14.65864 -14.23562 -14.03802 -13.71734 -13.33426 -12.94722 -12.80480 -12.50460 -12.37742 -12.16711 -11.86268 -11.51521 -11.04907 -10.99662 -10.56934 -10.17003 -10.05630 -8.12589 -6.23275 1.01831 1.44782 1.45757 1.46747 1.56052 2.45255 3.18900 3.37665 3.84351 3.97105 4.23793 4.31463 4.45526 4.60236 4.67405 4.81381 4.93963 5.00328 5.08848 5.18131 5.23402 5.31048 5.58311 5.76509 5.80591 5.90851 5.92978 6.32427 6.63317 6.89279 7.46317 8.96692 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.068879 B = 0.008844 C = 0.008191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.410585 B = 3165.185026 C = 3417.385534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.176 4.176 3 C -0.072 4.072 4 C -0.134 4.134 5 H 0.103 0.897 6 C -0.098 4.098 7 C 0.045 3.955 8 H 0.011 0.989 9 C -0.526 4.526 10 H 0.067 0.933 11 C 0.011 3.989 12 N -0.924 5.924 13 Si 0.955 3.045 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.263 1.263 17 C -0.160 4.160 18 C 0.371 3.629 19 O -0.492 6.492 20 H 0.104 0.896 21 H 0.114 0.886 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.260 0.740 28 H 0.055 0.945 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 0.739 -3.703 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.195 4.195 3 C -0.109 4.109 4 C -0.153 4.153 5 H 0.121 0.879 6 C -0.135 4.135 7 C 0.026 3.974 8 H 0.029 0.971 9 C -0.564 4.564 10 H 0.085 0.915 11 C -0.188 4.188 12 N -0.563 5.563 13 Si 0.781 3.219 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.187 1.187 17 C -0.198 4.198 18 C 0.251 3.749 19 O -0.368 6.368 20 H 0.123 0.877 21 H 0.132 0.868 22 H 0.111 0.889 23 H 0.119 0.881 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.684 0.053 -3.696 11.305 hybrid contribution 1.303 0.276 0.047 1.333 sum -9.381 0.328 -3.648 10.071 Atomic orbital electron populations 1.23996 0.94999 1.02896 0.99994 1.23117 0.96900 0.98510 1.00931 1.20653 0.97236 0.96494 0.96485 1.22256 0.95844 0.96016 1.01163 0.87933 1.22393 0.95063 0.93907 1.02177 1.19545 0.92544 0.91301 0.93979 0.97129 1.21474 0.92604 1.05920 1.36380 0.91512 1.25821 1.00336 0.97639 0.95007 1.70089 1.14800 1.30161 1.41229 0.85596 0.77984 0.79330 0.79002 1.20193 1.21617 1.18694 1.22930 0.95144 0.99723 1.02037 1.25686 0.94355 0.88220 0.66684 1.90252 1.88247 1.18161 1.40180 0.87724 0.86832 0.88887 0.88109 0.91132 0.90680 0.90579 0.93092 0.92656 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 14.32 67.78 0.97 -2.94 15 2 C -0.18 -4.80 9.07 25.65 0.23 -4.57 15 3 C -0.07 -1.94 4.99 29.85 0.15 -1.79 15 4 C -0.13 -4.40 2.86 -10.87 -0.03 -4.43 15 5 H 0.10 3.17 8.14 -2.39 -0.02 3.15 15 6 C -0.10 -3.49 5.81 31.71 0.18 -3.30 15 7 C 0.04 2.12 2.76 -10.08 -0.03 2.09 15 8 H 0.01 0.55 8.14 -2.38 -0.02 0.53 15 9 C -0.53 -27.16 8.50 25.60 0.22 -26.94 15 10 H 0.07 3.29 7.77 -2.91 -0.02 3.26 15 11 C 0.01 0.58 5.37 84.65 0.45 1.04 15 12 N -0.92 -52.92 12.49 21.45 0.27 -52.66 15 13 Si 0.96 42.12 29.54 68.60 2.03 44.15 15 14 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 15 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 16 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 17 C -0.16 -7.45 5.69 31.00 0.18 -7.27 15 18 C 0.37 15.17 7.05 29.71 0.21 15.38 15 19 O -0.49 -21.76 16.27 -1.44 -0.02 -21.78 15 20 H 0.10 1.98 8.06 -2.91 -0.02 1.96 15 21 H 0.11 1.99 7.84 -2.91 -0.02 1.96 15 22 H 0.09 2.99 6.59 -2.91 -0.02 2.97 15 23 H 0.10 2.19 7.79 -2.39 -0.02 2.17 15 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 25 H 0.07 2.54 7.74 -2.39 -0.02 2.52 15 26 H 0.08 2.44 8.14 -2.39 -0.02 2.43 15 27 H 0.26 14.30 8.31 -92.70 -0.77 13.53 15 28 H 0.05 2.92 7.70 -2.39 -0.02 2.90 15 29 H 0.08 3.88 8.05 -2.39 -0.02 3.87 15 Total: -1.00 -59.46 248.45 5.92 -53.55 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.11 Total: 9.48 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 2.54 Total: -32.74 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.27 Total: -52.66 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.02 Total: -21.78 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -59.46 5.92 -53.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144259130.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.044 kcal (2) G-P(sol) polarization free energy of solvation -59.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds