Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47063 * 269.99813 * 3 2 1 5 5 H 1.48496 * 109.47243 * 29.99678 * 3 2 1 6 6 H 1.48496 * 109.46998 * 150.00003 * 3 2 1 7 7 C 1.37876 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99511 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47279 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47140 * 54.99823 * 10 9 7 12 12 C 1.52996 * 109.47165 * 294.99868 * 10 9 7 13 13 C 1.52998 * 109.47303 * 239.99709 * 12 10 9 14 14 C 1.52998 * 109.46998 * 60.00342 * 13 12 10 15 15 C 1.53006 * 109.46818 * 299.99953 * 14 13 12 16 16 C 1.52997 * 109.47127 * 359.97438 * 15 14 13 17 17 C 1.53000 * 109.47060 * 300.00449 * 16 15 14 18 18 C 1.52992 * 109.47302 * 299.99905 * 13 12 10 19 19 H 0.97001 * 119.99977 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47372 * 60.00155 * 9 7 2 21 21 H 1.09001 * 109.47436 * 299.99958 * 9 7 2 22 22 H 1.08998 * 109.46949 * 0.02562 * 12 10 9 23 23 H 1.09004 * 109.47164 * 119.99594 * 12 10 9 24 24 H 1.09002 * 109.47204 * 179.97438 * 13 12 10 25 25 H 1.09002 * 109.47539 * 59.99748 * 14 13 12 26 26 H 1.08995 * 109.47495 * 179.97438 * 14 13 12 27 27 H 1.08998 * 109.46505 * 239.99645 * 15 14 13 28 28 H 1.08996 * 109.46884 * 120.00526 * 15 14 13 29 29 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 30 30 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 31 31 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 32 32 H 1.09005 * 109.47280 * 179.97438 * 18 13 12 33 33 H 1.09000 * 109.47344 * 299.99683 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9293 -3.5552 0.8413 12 6 3.0399 -3.6536 -1.3079 13 6 2.8090 -4.9694 -2.0537 14 6 1.3188 -5.1250 -2.3638 15 6 0.5241 -5.1335 -1.0564 16 6 1.4844 -4.9841 0.1253 17 6 2.4782 -6.1474 0.1249 18 6 3.2734 -6.1379 -1.1822 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.7094 -2.8208 -1.9286 23 1 4.1016 -3.5426 -1.0870 24 1 3.3748 -4.9632 -2.9853 25 1 0.9880 -4.2925 -2.9847 26 1 1.1543 -6.0622 -2.8955 27 1 -0.0180 -6.0749 -0.9669 28 1 -0.1843 -4.3051 -1.0565 29 1 0.9182 -4.9906 1.0567 30 1 3.1621 -6.0412 0.9671 31 1 1.9359 -7.0887 0.2143 32 1 3.1084 -7.0754 -1.7133 33 1 4.3350 -6.0271 -0.9613 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167430915.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = -42.193102 kcal Electronic energy + Delta-G solvation = -12825.486413 eV Core-core repulsion = 10849.044777 eV Total energy + Delta-G solvation = -1976.441636 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.85671 -33.44380 -31.27409 -30.65058 -30.33085 -26.53996 -23.14860 -22.06421 -21.37554 -19.98622 -16.33099 -15.90352 -15.74084 -14.99573 -14.72637 -14.10892 -12.50147 -12.26508 -12.09604 -11.67148 -11.61764 -11.48661 -11.39828 -11.38419 -10.98718 -10.91593 -10.58715 -10.09987 -9.98811 -9.68873 -9.39213 -9.10372 -8.77567 -8.70689 -8.26906 -5.93450 -3.94201 3.34797 3.41182 3.44613 4.50923 5.08815 5.16161 5.20721 5.42109 5.72633 5.80084 5.88882 5.91615 5.92790 5.96114 6.10062 6.20394 6.22933 6.31201 6.37320 6.51083 6.65959 6.74231 6.85353 6.93624 7.09878 7.12282 7.19223 7.39829 7.77738 7.95482 8.08530 8.52942 9.13083 9.68934 11.17828 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.057229 B = 0.010175 C = 0.009784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.140909 B = 2751.198735 C = 2861.098738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.075 4.075 11 H 0.052 0.948 12 C -0.099 4.099 13 C -0.088 4.088 14 C -0.108 4.108 15 C -0.112 4.112 16 C -0.083 4.083 17 C -0.112 4.112 18 C -0.109 4.109 19 H 0.259 0.741 20 H 0.020 0.980 21 H 0.011 0.989 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 -10.396 -2.565 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.093 4.093 11 H 0.070 0.930 12 C -0.136 4.136 13 C -0.106 4.106 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.102 4.102 17 C -0.149 4.149 18 C -0.147 4.147 19 H 0.068 0.932 20 H 0.039 0.961 21 H 0.029 0.971 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.651 -10.278 -2.559 11.203 hybrid contribution 0.442 0.997 0.030 1.091 sum 4.093 -9.280 -2.529 10.453 Atomic orbital electron populations 1.69968 1.05982 1.26351 1.51369 1.25012 0.94794 0.99062 0.95653 0.86666 0.79901 0.83857 0.78015 1.20782 1.21348 1.19968 1.21286 0.92986 0.91108 1.49718 0.92793 1.19236 0.93657 0.90909 0.97022 1.21180 0.97650 0.94302 0.96182 0.92985 1.21550 0.98763 0.95898 0.97435 1.21072 0.95900 0.95968 0.97675 1.21462 0.95136 1.00474 0.97456 1.21521 0.97934 1.00897 0.94576 1.21115 0.95954 0.95365 0.97735 1.21539 0.98081 0.98088 0.97217 1.21502 0.99087 0.97704 0.96370 0.93177 0.96136 0.97088 0.90820 0.93696 0.92414 0.92102 0.93312 0.93504 0.91021 0.92045 0.92639 0.93071 0.93066 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.50 8.28 -34.44 -0.29 -14.79 16 8 H 0.05 1.50 7.62 -52.48 -0.40 1.10 16 9 C 0.03 0.74 3.73 -27.89 -0.10 0.64 16 10 C -0.07 -1.56 2.17 -90.60 -0.20 -1.76 16 11 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 12 C -0.10 -1.91 4.90 -26.73 -0.13 -2.04 16 13 C -0.09 -1.41 3.19 -90.63 -0.29 -1.70 16 14 C -0.11 -1.74 5.71 -26.73 -0.15 -1.89 16 15 C -0.11 -1.92 5.36 -26.73 -0.14 -2.06 16 16 C -0.08 -1.49 2.72 -90.59 -0.25 -1.74 16 17 C -0.11 -1.68 5.71 -26.73 -0.15 -1.84 16 18 C -0.11 -1.57 5.71 -26.74 -0.15 -1.72 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H 0.02 0.56 6.71 -51.93 -0.35 0.21 16 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.07 1.59 7.18 -51.93 -0.37 1.22 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.38 6.54 -51.93 -0.34 1.04 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 251.15 15.07 3.78 3.78 Total: -1.00 -29.25 251.15 -8.12 -37.37 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.67 Total: -4.23 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -1.95 Total: -27.41 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.25 -8.12 -37.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167430915.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.822 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds