Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47063 * 269.99813 * 3 2 1 5 5 H 1.48496 * 109.47243 * 29.99678 * 3 2 1 6 6 H 1.48496 * 109.46998 * 150.00003 * 3 2 1 7 7 C 1.37876 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99511 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47279 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47140 * 54.99823 * 10 9 7 12 12 C 1.52996 * 109.47165 * 294.99868 * 10 9 7 13 13 C 1.52998 * 109.47303 * 239.99709 * 12 10 9 14 14 C 1.52998 * 109.46998 * 60.00342 * 13 12 10 15 15 C 1.53006 * 109.46818 * 299.99953 * 14 13 12 16 16 C 1.52997 * 109.47127 * 359.97438 * 15 14 13 17 17 C 1.53000 * 109.47060 * 300.00449 * 16 15 14 18 18 C 1.52992 * 109.47302 * 299.99905 * 13 12 10 19 19 H 0.97001 * 119.99977 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47372 * 60.00155 * 9 7 2 21 21 H 1.09001 * 109.47436 * 299.99958 * 9 7 2 22 22 H 1.08998 * 109.46949 * 0.02562 * 12 10 9 23 23 H 1.09004 * 109.47164 * 119.99594 * 12 10 9 24 24 H 1.09002 * 109.47204 * 179.97438 * 13 12 10 25 25 H 1.09002 * 109.47539 * 59.99748 * 14 13 12 26 26 H 1.08995 * 109.47495 * 179.97438 * 14 13 12 27 27 H 1.08998 * 109.46505 * 239.99645 * 15 14 13 28 28 H 1.08996 * 109.46884 * 120.00526 * 15 14 13 29 29 H 1.09002 * 109.47153 * 180.02562 * 16 15 14 30 30 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 31 31 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 32 32 H 1.09005 * 109.47280 * 179.97438 * 18 13 12 33 33 H 1.09000 * 109.47344 * 299.99683 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9293 -3.5552 0.8413 12 6 3.0399 -3.6536 -1.3079 13 6 2.8090 -4.9694 -2.0537 14 6 1.3188 -5.1250 -2.3638 15 6 0.5241 -5.1335 -1.0564 16 6 1.4844 -4.9841 0.1253 17 6 2.4782 -6.1474 0.1249 18 6 3.2734 -6.1379 -1.1822 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.7094 -2.8208 -1.9286 23 1 4.1016 -3.5426 -1.0870 24 1 3.3748 -4.9632 -2.9853 25 1 0.9880 -4.2925 -2.9847 26 1 1.1543 -6.0622 -2.8955 27 1 -0.0180 -6.0749 -0.9669 28 1 -0.1843 -4.3051 -1.0565 29 1 0.9182 -4.9906 1.0567 30 1 3.1621 -6.0412 0.9671 31 1 1.9359 -7.0887 0.2143 32 1 3.1084 -7.0754 -1.7133 33 1 4.3350 -6.0271 -0.9613 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167430915.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = -57.757155 kcal Electronic energy + Delta-G solvation = -12826.161321 eV Core-core repulsion = 10849.044777 eV Total energy + Delta-G solvation = -1977.116544 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27693 -35.48900 -33.10699 -32.08011 -31.61543 -28.49585 -25.09326 -23.34415 -22.80874 -21.65246 -18.49008 -17.26228 -17.18983 -16.64963 -16.37374 -15.75205 -14.31110 -14.11755 -13.74341 -13.33550 -12.87782 -12.84964 -12.83559 -12.78565 -12.76473 -12.60136 -12.40609 -11.85921 -11.75195 -11.27402 -11.15833 -10.64597 -10.45501 -10.43477 -10.34457 -8.17543 -6.26853 1.37575 1.38832 1.49797 2.40882 3.15055 3.79290 3.82595 3.89193 4.44881 4.54991 4.56900 4.58235 4.61093 4.62739 4.67230 4.69857 4.83649 4.87374 5.17111 5.22138 5.23946 5.39676 5.41932 5.47796 5.54625 5.57177 5.62125 5.66917 5.72279 5.90179 5.95642 6.32167 6.90096 7.41143 8.94180 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.057229 B = 0.010175 C = 0.009784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.140909 B = 2751.198735 C = 2861.098738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.071 4.071 11 H 0.042 0.958 12 C -0.096 4.096 13 C -0.085 4.085 14 C -0.107 4.107 15 C -0.112 4.112 16 C -0.085 4.085 17 C -0.107 4.107 18 C -0.105 4.105 19 H 0.261 0.739 20 H -0.004 1.004 21 H -0.024 1.024 22 H 0.040 0.960 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -11.837 -3.142 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.089 4.089 11 H 0.061 0.939 12 C -0.134 4.134 13 C -0.103 4.103 14 C -0.145 4.145 15 C -0.149 4.149 16 C -0.103 4.103 17 C -0.144 4.144 18 C -0.142 4.142 19 H 0.070 0.930 20 H 0.014 0.986 21 H -0.005 1.005 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.270 -11.729 -3.137 13.236 hybrid contribution -0.114 1.471 0.229 1.493 sum 5.156 -10.259 -2.908 11.844 Atomic orbital electron populations 1.70109 1.07730 1.27470 1.52273 1.25950 0.95718 1.03156 0.95139 0.85528 0.78725 0.78868 0.78446 1.19828 1.20817 1.18854 1.21677 0.93294 0.92390 1.49478 0.92556 1.19084 0.93927 0.92759 0.94088 1.21059 0.96673 0.94199 0.97007 0.93913 1.21466 0.98601 0.97141 0.96195 1.21075 0.96089 0.94697 0.98472 1.21480 0.95025 1.01365 0.96619 1.21502 0.97505 1.00770 0.95145 1.21094 0.96606 0.95021 0.97597 1.21513 0.97497 0.97294 0.98094 1.21503 0.99390 0.97810 0.95504 0.92990 0.98571 1.00519 0.94146 0.92864 0.90477 0.94108 0.90028 0.90760 0.94713 0.93178 0.92285 0.90657 0.90248 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.53 -30.99 8.28 25.60 0.21 -30.78 16 8 H 0.06 3.18 7.62 -2.91 -0.02 3.16 16 9 C 0.04 2.09 3.73 29.84 0.11 2.20 16 10 C -0.07 -3.03 2.17 -10.78 -0.02 -3.05 16 11 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 12 C -0.10 -3.70 4.90 30.59 0.15 -3.55 16 13 C -0.08 -2.52 3.19 -10.80 -0.03 -2.56 16 14 C -0.11 -3.28 5.71 30.60 0.17 -3.10 16 15 C -0.11 -3.78 5.36 30.60 0.16 -3.61 16 16 C -0.08 -2.98 2.72 -10.78 -0.03 -3.01 16 17 C -0.11 -2.86 5.71 30.59 0.17 -2.69 16 18 C -0.10 -2.56 5.71 30.59 0.17 -2.39 16 19 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 20 H 0.00 -0.24 6.71 -2.39 -0.02 -0.25 16 21 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 22 H 0.04 1.79 7.18 -2.39 -0.02 1.77 16 23 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.03 1.40 6.54 -2.39 -0.02 1.38 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -64.81 251.15 4.89 -59.92 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.05 Total: 2.96 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 1.54 Total: -52.23 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.28 Total: -58.21 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -64.81 4.89 -59.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167430915.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.163 kcal (2) G-P(sol) polarization free energy of solvation -64.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds