Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47148 * 2 1 4 4 C 1.52999 * 109.47007 * 119.99324 * 2 1 3 5 5 N 1.46499 * 109.47171 * 175.00099 * 4 2 1 6 6 C 1.36418 * 126.55823 * 265.02265 * 5 4 2 7 7 C 1.36219 * 107.19767 * 179.97438 * 6 5 4 8 8 N 1.32756 * 108.61652 * 0.26917 * 7 6 5 9 9 C 1.32987 * 109.22682 * 359.56246 * 8 7 6 10 10 C 1.39994 * 125.96158 * 180.17102 * 9 8 7 11 11 H 1.08001 * 119.99489 * 180.30553 * 10 9 8 12 12 C 1.40233 * 120.00202 * 0.30809 * 10 9 8 13 13 N 1.30691 * 120.00201 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47121 * 59.99806 * 14 12 10 16 16 H 1.48503 * 109.47178 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47451 * 299.99782 * 14 12 10 18 18 H 1.09004 * 109.47132 * 300.00479 * 1 2 3 19 19 H 1.09002 * 109.46594 * 60.00455 * 1 2 3 20 20 H 1.08997 * 109.47160 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47659 * 239.99327 * 2 1 3 22 22 H 1.09003 * 109.46485 * 299.99379 * 3 2 1 23 23 H 1.08994 * 109.47390 * 59.99162 * 3 2 1 24 24 H 1.08998 * 109.47099 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47275 * 55.00326 * 4 2 1 26 26 H 1.08996 * 109.47650 * 295.00202 * 4 2 1 27 27 H 1.08008 * 126.40257 * 359.94819 * 6 5 4 28 28 H 1.08002 * 125.68842 * 179.97438 * 7 6 5 29 29 H 0.96993 * 120.00262 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.2202 -1.8874 0.7257 7 6 5.5380 -1.5661 0.8520 8 7 5.6293 -0.3522 1.3817 9 6 4.4068 0.1263 1.5936 10 6 4.0969 1.3785 2.1374 11 1 3.0653 1.6683 2.2722 12 6 5.1260 2.2566 2.5069 13 7 6.3743 1.9058 2.3442 14 14 4.7124 3.9278 3.2318 15 1 3.9302 3.7457 4.4810 16 1 5.9681 4.6596 3.5368 17 1 3.9101 4.7065 2.2546 18 1 -0.3633 0.5139 0.8900 19 1 -0.3632 0.5138 -0.8901 20 1 -0.3633 -1.0276 0.0005 21 1 1.8934 -0.5139 -0.8898 22 1 1.6767 1.9563 -0.8901 23 1 1.6766 1.9564 0.8898 24 1 3.1300 1.4425 -0.0005 25 1 1.6054 -1.7196 1.2953 26 1 1.7516 -0.1582 2.1370 27 1 3.8204 -2.8100 0.3315 28 1 6.3696 -2.1960 0.5726 29 1 7.0861 2.5129 2.6001 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212169968.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = 43.489290 kcal Electronic energy + Delta-G solvation = -12421.349222 eV Core-core repulsion = 10345.082709 eV Total energy + Delta-G solvation = -2076.266512 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87830 -35.72743 -33.27764 -31.01073 -28.66763 -26.56543 -25.58635 -24.50452 -20.18848 -19.74640 -18.91338 -16.68891 -15.57084 -14.56217 -14.36157 -14.18992 -13.13687 -12.67708 -12.42618 -12.25969 -11.88208 -11.58772 -11.50291 -11.14215 -11.07983 -10.61947 -10.40910 -10.37190 -10.21509 -9.86183 -9.09497 -7.83839 -7.67630 -6.94082 -6.31573 -4.17509 3.10238 3.19125 3.20017 3.74634 4.07242 4.47436 4.80859 5.26263 5.32034 5.53114 5.76828 5.78253 5.97197 6.04316 6.21347 6.32690 6.35197 6.43485 6.54035 6.63700 6.80785 7.19308 7.24123 7.38709 7.72049 8.19340 8.33028 8.67928 9.05958 9.43379 10.34971 10.62070 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.030966 B = 0.016050 C = 0.011244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.011041 B = 1744.139480 C = 2489.636925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.148 4.148 4 C 0.133 3.867 5 N -0.505 5.505 6 C -0.178 4.178 7 C -0.019 4.019 8 N -0.520 5.520 9 C 0.377 3.623 10 C -0.460 4.460 11 H 0.080 0.920 12 C 0.082 3.918 13 N -0.745 5.745 14 Si 0.904 3.096 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.267 1.267 18 H 0.054 0.946 19 H 0.052 0.948 20 H 0.049 0.951 21 H 0.065 0.935 22 H 0.037 0.963 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 -0.543 -1.990 8.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.206 4.206 4 C 0.008 3.992 5 N -0.195 5.195 6 C -0.308 4.308 7 C -0.172 4.172 8 N -0.241 5.241 9 C 0.134 3.866 10 C -0.499 4.499 11 H 0.098 0.902 12 C -0.142 4.142 13 N -0.370 5.370 14 Si 0.729 3.271 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.192 1.192 18 H 0.073 0.927 19 H 0.072 0.928 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.664 -0.140 -1.804 7.875 hybrid contribution -0.988 0.127 0.052 0.998 sum -8.652 -0.012 -1.752 8.828 Atomic orbital electron populations 1.21790 0.95543 1.01045 1.01644 1.21511 0.94732 0.98115 0.98582 1.22062 1.04311 0.94079 1.00101 1.21328 0.80208 0.99613 0.98017 1.45405 1.04644 1.15476 1.53941 1.21817 0.93213 0.95407 1.20375 1.22115 0.93383 0.96663 1.05036 1.71285 1.20218 1.08486 1.24111 1.20232 0.81977 0.89958 0.94454 1.18137 0.94060 0.96995 1.40745 0.90203 1.25682 0.94517 0.99243 0.94727 1.70012 0.99410 1.34486 1.33111 0.86465 0.78545 0.82126 0.79989 1.19335 1.20446 1.19214 0.92668 0.92841 0.93208 0.91626 0.94431 0.92717 0.89591 0.91882 0.90664 0.85071 0.85127 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 37.16 0.34 -1.53 15 2 C -0.11 -1.87 3.13 -90.62 -0.28 -2.15 15 3 C -0.15 -2.78 7.73 37.16 0.29 -2.49 15 4 C 0.13 2.54 5.33 -4.04 -0.02 2.51 15 5 N -0.50 -12.14 2.69 -115.97 -0.31 -12.46 15 6 C -0.18 -4.23 11.60 -16.24 -0.19 -4.42 15 7 C -0.02 -0.50 11.85 -17.88 -0.21 -0.71 15 8 N -0.52 -15.43 9.41 -12.72 -0.12 -15.55 15 9 C 0.38 10.50 6.31 -155.59 -0.98 9.52 15 10 C -0.46 -12.33 7.05 -38.17 -0.27 -12.60 15 11 H 0.08 1.97 5.54 -52.49 -0.29 1.68 15 12 C 0.08 2.16 5.50 -17.29 -0.10 2.06 15 13 N -0.75 -21.14 11.90 55.56 0.66 -20.47 15 14 Si 0.90 19.33 29.56 -169.99 -5.03 14.31 15 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 17 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 18 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 20 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 21 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 23 H 0.05 1.00 7.09 -51.93 -0.37 0.63 15 24 H 0.09 1.98 5.44 -51.93 -0.28 1.69 15 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.07 1.43 7.60 -51.93 -0.39 1.03 15 27 H 0.13 2.67 8.06 -52.48 -0.42 2.24 15 28 H 0.13 3.01 8.06 -52.49 -0.42 2.59 15 29 H 0.27 7.03 8.29 -40.82 -0.34 6.69 15 LS Contribution 241.49 15.07 3.64 3.64 Total: -1.00 -31.00 241.49 -6.43 -37.43 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.85 Total: 2.92 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.42 Total: -9.81 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.23 Total: -48.49 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.00 -6.43 -37.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212169968.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.924 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds