Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47148 * 2 1 4 4 C 1.52999 * 109.47007 * 119.99324 * 2 1 3 5 5 N 1.46499 * 109.47171 * 175.00099 * 4 2 1 6 6 C 1.36418 * 126.55823 * 265.02265 * 5 4 2 7 7 C 1.36219 * 107.19767 * 179.97438 * 6 5 4 8 8 N 1.32756 * 108.61652 * 0.26917 * 7 6 5 9 9 C 1.32987 * 109.22682 * 359.56246 * 8 7 6 10 10 C 1.39994 * 125.96158 * 180.17102 * 9 8 7 11 11 H 1.08001 * 119.99489 * 180.30553 * 10 9 8 12 12 C 1.40233 * 120.00202 * 0.30809 * 10 9 8 13 13 N 1.30691 * 120.00201 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47121 * 59.99806 * 14 12 10 16 16 H 1.48503 * 109.47178 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47451 * 299.99782 * 14 12 10 18 18 H 1.09004 * 109.47132 * 300.00479 * 1 2 3 19 19 H 1.09002 * 109.46594 * 60.00455 * 1 2 3 20 20 H 1.08997 * 109.47160 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47659 * 239.99327 * 2 1 3 22 22 H 1.09003 * 109.46485 * 299.99379 * 3 2 1 23 23 H 1.08994 * 109.47390 * 59.99162 * 3 2 1 24 24 H 1.08998 * 109.47099 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47275 * 55.00326 * 4 2 1 26 26 H 1.08996 * 109.47650 * 295.00202 * 4 2 1 27 27 H 1.08008 * 126.40257 * 359.94819 * 6 5 4 28 28 H 1.08002 * 125.68842 * 179.97438 * 7 6 5 29 29 H 0.96993 * 120.00262 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.2202 -1.8874 0.7257 7 6 5.5380 -1.5661 0.8520 8 7 5.6293 -0.3522 1.3817 9 6 4.4068 0.1263 1.5936 10 6 4.0969 1.3785 2.1374 11 1 3.0653 1.6683 2.2722 12 6 5.1260 2.2566 2.5069 13 7 6.3743 1.9058 2.3442 14 14 4.7124 3.9278 3.2318 15 1 3.9302 3.7457 4.4810 16 1 5.9681 4.6596 3.5368 17 1 3.9101 4.7065 2.2546 18 1 -0.3633 0.5139 0.8900 19 1 -0.3632 0.5138 -0.8901 20 1 -0.3633 -1.0276 0.0005 21 1 1.8934 -0.5139 -0.8898 22 1 1.6767 1.9563 -0.8901 23 1 1.6766 1.9564 0.8898 24 1 3.1300 1.4425 -0.0005 25 1 1.6054 -1.7196 1.2953 26 1 1.7516 -0.1582 2.1370 27 1 3.8204 -2.8100 0.3315 28 1 6.3696 -2.1960 0.5726 29 1 7.0861 2.5129 2.6001 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212169968.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = 24.676071 kcal Electronic energy + Delta-G solvation = -12422.165024 eV Core-core repulsion = 10345.082709 eV Total energy + Delta-G solvation = -2077.082315 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.79646 -37.20266 -35.24821 -32.76688 -30.63510 -27.96907 -27.22937 -26.37048 -21.83489 -21.65926 -20.64298 -18.54364 -17.49893 -16.32315 -15.86429 -15.71351 -14.81175 -14.46344 -14.10020 -13.94950 -13.35027 -13.13417 -13.05534 -12.82591 -12.67876 -12.25145 -11.99547 -11.92708 -11.75776 -11.47176 -11.00060 -9.77438 -9.70921 -8.93912 -8.27300 -6.20051 1.39511 1.43951 1.56293 1.86826 2.28618 2.73575 2.81358 3.68988 3.88643 4.04462 4.20355 4.49982 4.56857 4.64996 4.77330 4.85329 4.86423 5.05162 5.10181 5.24787 5.27202 5.39385 5.50113 5.63634 5.79311 6.25096 6.36645 6.74497 7.07908 7.48142 8.36572 8.69343 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.030966 B = 0.016050 C = 0.011244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.011041 B = 1744.139480 C = 2489.636925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C -0.144 4.144 4 C 0.124 3.876 5 N -0.505 5.505 6 C -0.154 4.154 7 C -0.063 4.063 8 N -0.571 5.571 9 C 0.347 3.653 10 C -0.476 4.476 11 H 0.093 0.907 12 C 0.029 3.971 13 N -0.797 5.797 14 Si 0.983 3.017 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.256 1.256 18 H 0.062 0.938 19 H 0.066 0.934 20 H 0.068 0.932 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.038 0.962 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.173 0.827 28 H 0.147 0.853 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.101 -0.460 -2.083 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 C -0.201 4.201 4 C 0.001 3.999 5 N -0.193 5.193 6 C -0.285 4.285 7 C -0.214 4.214 8 N -0.293 5.293 9 C 0.102 3.898 10 C -0.516 4.516 11 H 0.111 0.889 12 C -0.189 4.189 13 N -0.424 5.424 14 Si 0.804 3.196 15 H -0.182 1.182 16 H -0.201 1.201 17 H -0.180 1.180 18 H 0.081 0.919 19 H 0.085 0.915 20 H 0.087 0.913 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.190 0.810 28 H 0.164 0.836 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.287 -0.080 -1.908 10.463 hybrid contribution -0.230 -0.031 0.011 0.232 sum -10.517 -0.110 -1.898 10.688 Atomic orbital electron populations 1.21715 0.91890 1.02709 1.02749 1.21442 0.97570 0.96253 0.96939 1.21959 1.01158 0.95901 1.01131 1.21723 0.77352 1.01733 0.99123 1.45684 1.06550 1.14528 1.52540 1.22415 0.92578 0.96089 1.17425 1.22556 0.95389 0.96559 1.06867 1.71160 1.22267 1.10320 1.25577 1.20518 0.82518 0.91156 0.95586 1.18506 0.94883 0.97204 1.40978 0.88894 1.26736 0.94073 1.03434 0.94672 1.70176 1.00763 1.36362 1.35095 0.85263 0.78442 0.76558 0.79387 1.18217 1.20136 1.18049 0.91889 0.91470 0.91302 0.92518 0.92491 0.92568 0.94327 0.88899 0.90759 0.81022 0.83551 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.19 71.98 0.66 -2.28 15 2 C -0.10 -3.23 3.13 -10.79 -0.03 -3.26 15 3 C -0.14 -5.21 7.73 71.98 0.56 -4.66 15 4 C 0.12 4.41 5.33 86.38 0.46 4.87 15 5 N -0.50 -23.87 2.69 -520.83 -1.40 -25.27 15 6 C -0.15 -7.11 11.60 83.51 0.97 -6.14 15 7 C -0.06 -3.31 11.85 84.08 1.00 -2.31 15 8 N -0.57 -34.98 9.41 -194.17 -1.83 -36.81 15 9 C 0.35 19.70 6.31 133.59 0.84 20.54 15 10 C -0.48 -25.92 7.05 23.18 0.16 -25.76 15 11 H 0.09 4.59 5.54 -2.91 -0.02 4.57 15 12 C 0.03 1.57 5.50 85.35 0.47 2.04 15 13 N -0.80 -46.88 11.90 21.88 0.26 -46.62 15 14 Si 0.98 39.93 29.56 68.60 2.03 41.96 15 15 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 16 H -0.28 -10.97 7.11 99.48 0.71 -10.26 15 17 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 18 H 0.06 1.32 8.14 -2.39 -0.02 1.30 15 19 H 0.07 1.33 8.14 -2.39 -0.02 1.32 15 20 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 22 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.06 1.96 7.09 -2.39 -0.02 1.95 15 24 H 0.04 1.77 5.44 -2.39 -0.01 1.76 15 25 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 26 H 0.07 2.67 7.60 -2.39 -0.02 2.65 15 27 H 0.17 6.38 8.06 -2.91 -0.02 6.36 15 28 H 0.15 6.88 8.06 -2.91 -0.02 6.85 15 29 H 0.27 14.72 8.29 -92.71 -0.77 13.95 15 Total: -1.00 -69.27 241.49 5.27 -64.00 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.12 Total: 19.71 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 5.09 Total: -16.97 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -2.97 Total: -108.70 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -69.27 5.27 -64.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212169968.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.676 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds