Wall clock time and date at job start Mon Mar 30 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47073 * 2 1 4 4 C 1.53001 * 109.47099 * 119.99593 * 2 1 3 5 5 C 1.50699 * 109.47532 * 239.99871 * 2 1 3 6 6 N 1.34502 * 126.40236 * 359.68734 * 5 2 1 7 7 H 0.97001 * 125.67825 * 0.02562 * 6 5 2 8 8 N 1.39879 * 108.64768 * 179.88083 * 6 5 2 9 9 C 1.30326 * 109.22545 * 0.39423 * 8 6 5 10 10 C 1.39277 * 126.40539 * 179.97438 * 5 2 1 11 11 C 1.41597 * 126.56027 * 359.97438 * 10 5 2 12 12 H 1.08003 * 119.99324 * 352.84937 * 11 10 5 13 13 C 1.39688 * 119.99813 * 172.85132 * 11 10 5 14 14 N 1.31021 * 120.00415 * 6.58853 * 13 11 10 15 15 Si 1.86805 * 119.99648 * 186.58214 * 13 11 10 16 16 H 1.48496 * 109.47150 * 94.99028 * 15 13 11 17 17 H 1.48500 * 109.46879 * 214.98837 * 15 13 11 18 18 H 1.48501 * 109.47221 * 334.98783 * 15 13 11 19 19 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47171 * 60.00759 * 1 2 3 21 21 H 1.09003 * 109.47393 * 300.00011 * 1 2 3 22 22 H 1.09003 * 109.47020 * 59.99760 * 3 2 1 23 23 H 1.08992 * 109.47207 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.46506 * 300.00208 * 3 2 1 25 25 H 1.09007 * 109.46764 * 60.00140 * 4 2 1 26 26 H 1.08992 * 109.47195 * 180.02562 * 4 2 1 27 27 H 1.09003 * 109.47321 * 300.00440 * 4 2 1 28 28 H 1.08001 * 125.96960 * 179.78547 * 9 8 6 29 29 H 0.97003 * 120.00612 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0324 -0.7104 -1.2304 6 7 1.2779 -1.2723 -2.1917 7 1 0.3083 -1.2895 -2.2122 8 7 2.1242 -1.8248 -3.1588 9 6 3.3637 -1.6231 -2.8101 10 6 3.3648 -0.9128 -1.5819 11 6 4.5029 -0.4906 -0.8529 12 1 4.3846 0.1443 0.0128 13 6 5.7785 -0.8952 -1.2534 14 7 5.9345 -1.5563 -2.3738 15 14 7.2620 -0.4937 -0.1916 16 1 7.5618 -1.6457 0.6961 17 1 8.4342 -0.2210 -1.0616 18 1 6.9695 0.7050 0.6348 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5137 -0.8901 21 1 -0.3634 0.5138 0.8900 22 1 1.6766 1.9564 0.8900 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 -1.7489 1.2493 26 1 3.1299 -0.7208 1.2495 27 1 1.6766 -0.2073 2.1393 28 1 4.2371 -1.9406 -3.3603 29 1 6.8203 -1.8369 -2.6522 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213848010.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:37 Heat of formation + Delta-G solvation = 46.870520 kcal Electronic energy + Delta-G solvation = -12483.063795 eV Core-core repulsion = 10406.943904 eV Total energy + Delta-G solvation = -2076.119891 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.43208 -35.63881 -33.38975 -29.70859 -28.46382 -26.50205 -26.46628 -24.73023 -20.72992 -19.56211 -18.41185 -16.77195 -15.12984 -14.71094 -13.71113 -13.49586 -13.16210 -12.70761 -12.60498 -12.03021 -11.53821 -11.51381 -11.17041 -11.03496 -10.98854 -10.77945 -10.26996 -10.25495 -10.02368 -9.55622 -9.20834 -8.67856 -7.78780 -7.05982 -6.37563 -3.91049 3.08438 3.23350 3.26314 3.52245 4.17510 4.47061 4.49879 5.50391 5.52165 5.58631 5.72446 6.08309 6.20702 6.24960 6.33476 6.36466 6.61869 6.69017 6.83464 6.90013 7.02458 7.12374 7.44508 7.68903 7.75932 8.21611 8.68868 8.90810 9.14549 9.24483 9.58004 10.62787 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.037165 B = 0.015063 C = 0.011573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.207428 B = 1858.464990 C = 2418.833660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.031 3.969 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.076 4.076 6 N -0.499 5.499 7 H 0.410 0.590 8 N -0.345 5.345 9 C 0.027 3.973 10 C -0.013 4.013 11 C -0.433 4.433 12 H 0.075 0.925 13 C 0.065 3.935 14 N -0.842 5.842 15 Si 0.907 3.093 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.267 1.267 19 H 0.048 0.952 20 H 0.048 0.952 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.199 0.801 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.534 2.873 4.991 7.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 C -0.195 4.195 4 C -0.194 4.194 5 C -0.200 4.200 6 N -0.210 5.210 7 H 0.249 0.751 8 N -0.169 5.169 9 C -0.160 4.160 10 C -0.022 4.022 11 C -0.468 4.468 12 H 0.093 0.907 13 C -0.145 4.145 14 N -0.474 5.474 15 Si 0.734 3.266 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.191 1.191 19 H 0.067 0.933 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.215 0.785 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.026 2.291 4.007 6.824 hybrid contribution 0.772 0.446 1.027 1.360 sum -4.254 2.737 5.034 7.137 Atomic orbital electron populations 1.21909 0.96443 1.00874 1.00981 1.18555 0.92719 0.94197 0.91679 1.21898 1.03271 0.94750 0.99570 1.21864 1.03362 0.99040 0.95146 1.20629 0.91756 1.11971 0.95596 1.45285 1.06764 1.49854 1.19145 0.75093 1.76533 1.03072 1.23165 1.14115 1.25002 0.93423 1.00030 0.97520 1.17876 0.90371 0.99586 0.94414 1.18818 0.89258 1.27637 1.11041 0.90728 1.25631 0.99981 0.94105 0.94785 1.69493 1.23846 1.33849 1.20244 0.86309 0.80886 0.79199 0.80207 1.20145 1.20769 1.19133 0.93265 0.93266 0.92908 0.94105 0.90622 0.93654 0.93671 0.90574 0.94158 0.78480 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.53 37.16 0.28 -1.97 15 2 C 0.03 0.58 0.77 -155.66 -0.12 0.46 15 3 C -0.14 -2.50 8.32 37.16 0.31 -2.19 15 4 C -0.14 -2.49 8.33 37.16 0.31 -2.18 15 5 C -0.08 -1.77 5.69 -81.04 -0.46 -2.23 15 6 N -0.50 -11.35 7.05 34.13 0.24 -11.11 15 7 H 0.41 7.85 8.02 -182.76 -1.46 6.38 15 8 N -0.35 -8.88 12.60 30.97 0.39 -8.49 15 9 C 0.03 0.74 10.92 -16.80 -0.18 0.55 15 10 C -0.01 -0.33 5.78 -106.84 -0.62 -0.95 15 11 C -0.43 -11.37 7.66 -37.76 -0.29 -11.66 15 12 H 0.07 1.86 4.77 -52.48 -0.25 1.61 15 13 C 0.06 1.67 5.48 -17.36 -0.10 1.58 15 14 N -0.84 -22.32 10.37 55.53 0.58 -21.74 15 15 Si 0.91 19.54 29.56 -169.99 -5.03 14.51 15 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 19 H 0.05 0.74 8.07 -51.92 -0.42 0.32 15 20 H 0.05 0.74 8.08 -51.93 -0.42 0.32 15 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.07 1.53 5.61 -51.93 -0.29 1.23 15 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.04 0.82 8.14 -51.92 -0.42 0.40 15 26 H 0.08 1.54 5.91 -51.93 -0.31 1.23 15 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 28 H 0.20 5.51 5.81 -52.49 -0.31 5.21 15 29 H 0.27 6.67 8.30 -40.82 -0.34 6.33 15 LS Contribution 236.67 15.07 3.57 3.57 Total: -1.00 -28.26 236.67 -5.82 -34.08 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.71 Total: 7.77 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -0.87 Total: -18.59 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 1.21 Total: -41.33 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.26 -5.82 -34.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213848010.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.951 kcal (2) G-P(sol) polarization free energy of solvation -28.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds