Wall clock time and date at job start Mon Mar 30 2020 02:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47073 * 2 1 4 4 C 1.53001 * 109.47099 * 119.99593 * 2 1 3 5 5 C 1.50699 * 109.47532 * 239.99871 * 2 1 3 6 6 N 1.34502 * 126.40236 * 359.68734 * 5 2 1 7 7 H 0.97001 * 125.67825 * 0.02562 * 6 5 2 8 8 N 1.39879 * 108.64768 * 179.88083 * 6 5 2 9 9 C 1.30326 * 109.22545 * 0.39423 * 8 6 5 10 10 C 1.39277 * 126.40539 * 179.97438 * 5 2 1 11 11 C 1.41597 * 126.56027 * 359.97438 * 10 5 2 12 12 H 1.08003 * 119.99324 * 352.84937 * 11 10 5 13 13 C 1.39688 * 119.99813 * 172.85132 * 11 10 5 14 14 N 1.31021 * 120.00415 * 6.58853 * 13 11 10 15 15 Si 1.86805 * 119.99648 * 186.58214 * 13 11 10 16 16 H 1.48496 * 109.47150 * 94.99028 * 15 13 11 17 17 H 1.48500 * 109.46879 * 214.98837 * 15 13 11 18 18 H 1.48501 * 109.47221 * 334.98783 * 15 13 11 19 19 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47171 * 60.00759 * 1 2 3 21 21 H 1.09003 * 109.47393 * 300.00011 * 1 2 3 22 22 H 1.09003 * 109.47020 * 59.99760 * 3 2 1 23 23 H 1.08992 * 109.47207 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.46506 * 300.00208 * 3 2 1 25 25 H 1.09007 * 109.46764 * 60.00140 * 4 2 1 26 26 H 1.08992 * 109.47195 * 180.02562 * 4 2 1 27 27 H 1.09003 * 109.47321 * 300.00440 * 4 2 1 28 28 H 1.08001 * 125.96960 * 179.78547 * 9 8 6 29 29 H 0.97003 * 120.00612 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0324 -0.7104 -1.2304 6 7 1.2779 -1.2723 -2.1917 7 1 0.3083 -1.2895 -2.2122 8 7 2.1242 -1.8248 -3.1588 9 6 3.3637 -1.6231 -2.8101 10 6 3.3648 -0.9128 -1.5819 11 6 4.5029 -0.4906 -0.8529 12 1 4.3846 0.1443 0.0128 13 6 5.7785 -0.8952 -1.2534 14 7 5.9345 -1.5563 -2.3738 15 14 7.2620 -0.4937 -0.1916 16 1 7.5618 -1.6457 0.6961 17 1 8.4342 -0.2210 -1.0616 18 1 6.9695 0.7050 0.6348 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5137 -0.8901 21 1 -0.3634 0.5138 0.8900 22 1 1.6766 1.9564 0.8900 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 -1.7489 1.2493 26 1 3.1299 -0.7208 1.2495 27 1 1.6766 -0.2073 2.1393 28 1 4.2371 -1.9406 -3.3603 29 1 6.8203 -1.8369 -2.6522 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213848010.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:37 Heat of formation + Delta-G solvation = 29.273072 kcal Electronic energy + Delta-G solvation = -12483.826878 eV Core-core repulsion = 10406.943904 eV Total energy + Delta-G solvation = -2076.882974 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.33199 -37.19543 -35.30950 -31.64609 -30.35361 -27.90984 -27.85593 -26.66394 -22.49865 -21.52273 -20.23658 -18.58419 -16.92845 -16.51803 -15.27555 -15.10781 -14.80643 -14.53775 -14.31919 -13.68166 -13.01577 -12.91910 -12.85213 -12.82134 -12.55906 -12.41170 -11.86511 -11.71815 -11.70250 -11.23774 -11.10572 -10.61028 -9.73579 -9.02259 -8.27419 -5.88526 1.34198 1.47538 1.59198 1.63591 2.38108 2.46866 2.69045 3.63434 4.05318 4.17020 4.28675 4.67945 4.81989 4.90958 4.91244 5.01499 5.09236 5.18036 5.21716 5.31948 5.40414 5.60959 5.66554 5.81664 5.89227 6.18492 6.70441 7.04331 7.24815 7.28181 7.60557 8.74441 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.037165 B = 0.015063 C = 0.011573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.207428 B = 1858.464990 C = 2418.833660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.023 3.977 3 C -0.133 4.133 4 C -0.133 4.133 5 C -0.051 4.051 6 N -0.481 5.481 7 H 0.428 0.572 8 N -0.363 5.363 9 C -0.004 4.004 10 C -0.057 4.057 11 C -0.451 4.451 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.875 5.875 15 Si 0.976 3.024 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.258 1.258 19 H 0.052 0.948 20 H 0.053 0.947 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.183 0.817 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.813 3.954 6.951 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.021 3.979 3 C -0.191 4.191 4 C -0.190 4.190 5 C -0.177 4.177 6 N -0.194 5.194 7 H 0.271 0.729 8 N -0.189 5.189 9 C -0.188 4.188 10 C -0.067 4.067 11 C -0.486 4.486 12 H 0.100 0.900 13 C -0.192 4.192 14 N -0.508 5.508 15 Si 0.800 3.200 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.182 1.182 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.102 0.898 22 H 0.096 0.904 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.199 0.801 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.329 3.366 5.952 9.317 hybrid contribution 1.003 0.123 0.426 1.097 sum -5.325 3.489 6.378 9.012 Atomic orbital electron populations 1.21869 0.93220 1.01789 1.02817 1.18823 0.95381 0.94111 0.89622 1.21842 1.01642 0.94417 1.01185 1.21816 1.01747 0.99233 0.96249 1.21405 0.90931 1.09273 0.96110 1.45382 1.07710 1.48105 1.18194 0.72906 1.76458 1.02868 1.24383 1.15167 1.24876 0.93619 1.01779 0.98554 1.18273 0.92221 1.01274 0.94923 1.19065 0.89809 1.28232 1.11447 0.90019 1.26481 1.02706 0.94064 0.95931 1.69611 1.24462 1.35054 1.21706 0.85254 0.77209 0.79138 0.78419 1.19880 1.20544 1.18155 0.92849 0.92823 0.89827 0.90432 0.93168 0.94081 0.94162 0.93116 0.90464 0.80099 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 7.53 71.98 0.54 -3.19 15 2 C 0.02 0.80 0.77 -52.93 -0.04 0.76 15 3 C -0.13 -4.48 8.32 71.98 0.60 -3.88 15 4 C -0.13 -4.48 8.33 71.98 0.60 -3.88 15 5 C -0.05 -2.30 5.69 42.40 0.24 -2.06 15 6 N -0.48 -21.35 7.05 -45.94 -0.32 -21.67 15 7 H 0.43 15.44 8.02 -213.46 -1.71 13.73 15 8 N -0.36 -18.89 12.60 -55.93 -0.71 -19.60 15 9 C 0.00 -0.21 10.92 85.82 0.94 0.72 15 10 C -0.06 -3.08 5.78 -21.30 -0.12 -3.20 15 11 C -0.45 -24.04 7.66 23.45 0.18 -23.86 15 12 H 0.08 4.10 4.77 -2.91 -0.01 4.08 15 13 C 0.01 0.75 5.48 85.16 0.47 1.22 15 14 N -0.88 -48.02 10.37 21.79 0.23 -47.80 15 15 Si 0.98 40.47 29.56 68.60 2.03 42.50 15 16 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 17 H -0.28 -11.38 7.11 99.48 0.71 -10.68 15 18 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 19 H 0.05 1.39 8.07 -2.38 -0.02 1.37 15 20 H 0.05 1.39 8.08 -2.39 -0.02 1.37 15 21 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.05 1.95 5.61 -2.39 -0.01 1.93 15 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.04 1.37 8.14 -2.38 -0.02 1.35 15 26 H 0.05 1.97 5.91 -2.39 -0.01 1.96 15 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 28 H 0.18 10.70 5.81 -2.91 -0.02 10.69 15 29 H 0.27 13.93 8.30 -92.71 -0.77 13.16 15 Total: -1.00 -61.78 236.67 4.07 -57.71 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.55 Total: 26.23 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 3.40 Total: -37.37 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -0.80 Total: -89.07 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -61.78 4.07 -57.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213848010.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.981 kcal (2) G-P(sol) polarization free energy of solvation -61.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds