Wall clock time and date at job start Mon Mar 30 2020 02:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50282 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52789 * 110.57647 * 299.75768 * 9 7 2 11 11 C 1.52365 * 109.91814 * 176.76662 * 10 9 7 12 12 C 1.52231 * 112.55900 * 55.32899 * 11 10 9 13 13 C 1.52332 * 112.36128 * 310.73411 * 12 11 10 14 14 C 1.52673 * 111.81603 * 50.53293 * 13 12 11 15 15 C 1.51865 * 111.75904 * 65.42450 * 14 13 12 16 16 C 1.51824 * 113.70592 * 290.27605 * 15 14 13 17 17 C 1.51973 * 113.59243 * 315.28854 * 16 15 14 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09356 * 109.26374 * 59.90254 * 9 7 2 20 20 H 1.10176 * 107.98387 * 58.87431 * 10 9 7 21 21 H 1.09628 * 109.06169 * 294.03439 * 11 10 9 22 22 H 1.09608 * 109.07436 * 176.66477 * 11 10 9 23 23 H 1.10704 * 107.69293 * 192.37988 * 12 11 10 24 24 H 1.08303 * 111.39056 * 76.28205 * 12 11 10 25 25 H 1.09417 * 109.35411 * 289.56477 * 13 12 11 26 26 H 1.09472 * 109.27207 * 171.35140 * 13 12 11 27 27 H 1.10165 * 108.06546 * 184.83686 * 14 13 12 28 28 H 1.10111 * 108.72966 * 51.59022 * 15 14 13 29 29 H 1.09747 * 109.55584 * 167.64978 * 15 14 13 30 30 H 1.10963 * 107.58020 * 196.43894 * 16 15 14 31 31 H 1.08679 * 111.24845 * 81.47292 * 16 15 14 32 32 H 1.09478 * 109.56534 * 283.13141 * 17 16 15 33 33 H 1.10045 * 108.75331 * 166.61260 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2531 -2.4956 -0.0005 10 6 0.3703 -2.6059 1.2416 11 6 -0.4441 -3.8925 1.1870 12 6 0.4278 -5.1287 1.0168 13 6 1.4350 -4.9761 -0.1158 14 6 2.2249 -3.6746 -0.0011 15 6 3.1060 -3.6579 1.2357 16 6 2.3297 -3.5609 2.5368 17 6 1.2150 -2.5284 2.5045 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5490 -0.8935 20 1 -0.3291 -1.7546 1.2385 21 1 -1.1514 -3.8334 0.3515 22 1 -1.0266 -3.9872 2.1106 23 1 -0.2367 -5.9768 0.7624 24 1 0.9187 -5.3967 1.9443 25 1 0.9078 -4.9921 -1.0745 26 1 2.1321 -5.8200 -0.0956 27 1 2.8677 -3.5855 -0.8913 28 1 3.7103 -4.5782 1.2517 29 1 3.8130 -2.8210 1.1717 30 1 3.0429 -3.2570 3.3308 31 1 1.9528 -4.5328 2.8440 32 1 1.6415 -1.5251 2.6048 33 1 0.5610 -2.6865 3.3753 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213851790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:29 Heat of formation + Delta-G solvation = -37.140474 kcal Electronic energy + Delta-G solvation = -13298.222484 eV Core-core repulsion = 11321.999946 eV Total energy + Delta-G solvation = -1976.222538 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.10179 -32.85942 -32.00654 -31.39542 -29.18330 -25.19614 -24.86443 -21.42991 -20.10976 -19.99864 -17.15810 -15.81761 -14.96779 -14.29185 -13.75121 -13.23449 -12.97288 -12.43369 -12.38759 -12.01128 -11.73187 -11.30110 -10.90297 -10.68586 -10.53394 -10.47727 -10.13506 -10.06840 -9.86437 -9.60114 -9.14513 -8.87149 -8.45535 -8.26875 -8.11231 -5.89142 -3.93195 3.35665 3.40509 3.43278 4.50186 5.39056 5.51992 5.60293 5.71445 5.74448 6.02938 6.08213 6.23581 6.32001 6.39438 6.47115 6.66569 6.72105 6.75425 6.80612 6.83788 6.84907 6.97367 7.02658 7.18423 7.24396 7.34527 7.57829 7.77900 7.85884 8.08618 8.26089 8.60477 9.09819 9.69318 11.16073 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.046500 B = 0.014330 C = 0.013591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.004190 B = 1953.457009 C = 2059.737312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.499 4.499 8 H 0.053 0.947 9 C 0.066 3.934 10 C -0.086 4.086 11 C -0.105 4.105 12 C -0.109 4.109 13 C -0.105 4.105 14 C -0.079 4.079 15 C -0.087 4.087 16 C -0.101 4.101 17 C -0.084 4.084 18 H 0.258 0.742 19 H 0.021 0.979 20 H 0.097 0.903 21 H 0.046 0.954 22 H 0.037 0.963 23 H 0.030 0.970 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.056 0.944 30 H 0.028 0.972 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.701 -6.682 2.817 7.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.712 3.288 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.048 3.952 10 C -0.104 4.104 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.142 4.142 14 C -0.097 4.097 15 C -0.124 4.124 16 C -0.139 4.139 17 C -0.122 4.122 18 H 0.068 0.932 19 H 0.039 0.961 20 H 0.115 0.885 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.547 -6.558 2.819 7.304 hybrid contribution 0.464 0.918 0.053 1.030 sum 2.010 -5.639 2.872 6.640 Atomic orbital electron populations 1.69842 1.05775 1.26181 1.51318 1.24922 0.94743 0.98696 0.95564 0.86789 0.79694 0.83782 0.78504 1.21475 1.20425 1.20464 1.21033 0.92751 0.90590 1.49365 0.92897 1.18453 0.92240 0.91009 0.93548 1.20893 0.98114 0.95807 0.95622 1.21380 0.97523 0.95791 0.99549 1.21348 0.97437 0.97157 0.98712 1.21389 0.97355 0.97598 0.97871 1.20901 0.97186 0.95497 0.96124 1.20952 0.97295 0.99467 0.94698 1.21183 0.97621 0.98705 0.96347 1.20990 0.95774 0.98609 0.96819 0.93162 0.96051 0.88482 0.93526 0.94454 0.95160 0.92268 0.93204 0.94165 0.93477 0.95224 0.92560 0.95292 0.93377 0.92154 0.95674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 2 C 0.06 1.68 5.32 -17.82 -0.09 1.58 16 3 Si 0.88 21.32 29.54 -169.99 -5.02 16.29 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.50 -13.43 7.11 -34.64 -0.25 -13.67 16 8 H 0.05 1.42 6.97 -52.49 -0.37 1.05 16 9 C 0.07 1.62 1.70 -92.19 -0.16 1.46 16 10 C -0.09 -1.98 2.24 -91.49 -0.20 -2.18 16 11 C -0.10 -2.09 5.33 -27.45 -0.15 -2.24 16 12 C -0.11 -1.94 5.09 -27.46 -0.14 -2.08 16 13 C -0.10 -1.92 5.38 -27.24 -0.15 -2.07 16 14 C -0.08 -1.65 2.32 -91.47 -0.21 -1.86 16 15 C -0.09 -1.69 4.88 -27.90 -0.14 -1.83 16 16 C -0.10 -1.92 4.97 -27.85 -0.14 -2.06 16 17 C -0.08 -1.81 4.94 -27.69 -0.14 -1.95 16 18 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 19 H 0.02 0.59 8.17 -51.73 -0.42 0.16 16 20 H 0.10 2.58 6.09 -51.26 -0.31 2.27 16 21 H 0.05 0.95 8.19 -51.57 -0.42 0.53 16 22 H 0.04 0.69 8.19 -51.58 -0.42 0.27 16 23 H 0.03 0.48 8.28 -50.95 -0.42 0.06 16 24 H 0.06 1.01 5.46 -52.32 -0.29 0.72 16 25 H 0.05 0.91 8.18 -51.69 -0.42 0.49 16 26 H 0.04 0.66 8.18 -51.66 -0.42 0.23 16 27 H 0.05 1.00 8.24 -51.26 -0.42 0.58 16 28 H 0.03 0.51 8.23 -51.30 -0.42 0.09 16 29 H 0.06 1.16 7.28 -51.50 -0.37 0.78 16 30 H 0.03 0.51 8.30 -50.80 -0.42 0.08 16 31 H 0.05 0.84 5.70 -52.11 -0.30 0.54 16 32 H 0.06 1.42 7.66 -51.66 -0.40 1.03 16 33 H 0.02 0.49 8.23 -51.33 -0.42 0.07 16 LS Contribution 241.11 15.07 3.63 3.63 Total: -1.00 -27.17 241.11 -7.91 -35.08 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -5.39 Total: -3.43 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -1.76 Total: -26.90 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.63 Total: -24.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.17 -7.91 -35.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213851790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.065 kcal (2) G-P(sol) polarization free energy of solvation -27.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds