Wall clock time and date at job start Mon Mar 30 2020 02:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50282 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52789 * 110.57647 * 299.75768 * 9 7 2 11 11 C 1.52365 * 109.91814 * 176.76662 * 10 9 7 12 12 C 1.52231 * 112.55900 * 55.32899 * 11 10 9 13 13 C 1.52332 * 112.36128 * 310.73411 * 12 11 10 14 14 C 1.52673 * 111.81603 * 50.53293 * 13 12 11 15 15 C 1.51865 * 111.75904 * 65.42450 * 14 13 12 16 16 C 1.51824 * 113.70592 * 290.27605 * 15 14 13 17 17 C 1.51973 * 113.59243 * 315.28854 * 16 15 14 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09356 * 109.26374 * 59.90254 * 9 7 2 20 20 H 1.10176 * 107.98387 * 58.87431 * 10 9 7 21 21 H 1.09628 * 109.06169 * 294.03439 * 11 10 9 22 22 H 1.09608 * 109.07436 * 176.66477 * 11 10 9 23 23 H 1.10704 * 107.69293 * 192.37988 * 12 11 10 24 24 H 1.08303 * 111.39056 * 76.28205 * 12 11 10 25 25 H 1.09417 * 109.35411 * 289.56477 * 13 12 11 26 26 H 1.09472 * 109.27207 * 171.35140 * 13 12 11 27 27 H 1.10165 * 108.06546 * 184.83686 * 14 13 12 28 28 H 1.10111 * 108.72966 * 51.59022 * 15 14 13 29 29 H 1.09747 * 109.55584 * 167.64978 * 15 14 13 30 30 H 1.10963 * 107.58020 * 196.43894 * 16 15 14 31 31 H 1.08679 * 111.24845 * 81.47292 * 16 15 14 32 32 H 1.09478 * 109.56534 * 283.13141 * 17 16 15 33 33 H 1.10045 * 108.75331 * 166.61260 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2531 -2.4956 -0.0005 10 6 0.3703 -2.6059 1.2416 11 6 -0.4441 -3.8925 1.1870 12 6 0.4278 -5.1287 1.0168 13 6 1.4350 -4.9761 -0.1158 14 6 2.2249 -3.6746 -0.0011 15 6 3.1060 -3.6579 1.2357 16 6 2.3297 -3.5609 2.5368 17 6 1.2150 -2.5284 2.5045 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5490 -0.8935 20 1 -0.3291 -1.7546 1.2385 21 1 -1.1514 -3.8334 0.3515 22 1 -1.0266 -3.9872 2.1106 23 1 -0.2367 -5.9768 0.7624 24 1 0.9187 -5.3967 1.9443 25 1 0.9078 -4.9921 -1.0745 26 1 2.1321 -5.8200 -0.0956 27 1 2.8677 -3.5855 -0.8913 28 1 3.7103 -4.5782 1.2517 29 1 3.8130 -2.8210 1.1717 30 1 3.0429 -3.2570 3.3308 31 1 1.9528 -4.5328 2.8440 32 1 1.6415 -1.5251 2.6048 33 1 0.5610 -2.6865 3.3753 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213851790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:29 Heat of formation + Delta-G solvation = -50.893633 kcal Electronic energy + Delta-G solvation = -13298.818866 eV Core-core repulsion = 11321.999946 eV Total energy + Delta-G solvation = -1976.818920 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77513 -34.85442 -33.55314 -33.06931 -31.03215 -26.83935 -26.75733 -23.23596 -21.74950 -21.57589 -18.94200 -17.70130 -16.83224 -16.11851 -15.40312 -14.90857 -14.69716 -14.01573 -13.94671 -13.83272 -13.40374 -13.12837 -12.79869 -12.42433 -12.33480 -12.06354 -11.86758 -11.57919 -11.54782 -11.45948 -10.91329 -10.71178 -10.17146 -10.09593 -10.01868 -7.99844 -6.10852 1.40835 1.41055 1.48282 2.46283 3.25889 3.99185 4.10263 4.12984 4.27559 4.53144 4.55014 4.65265 4.71972 4.85328 4.92738 5.06992 5.15234 5.18243 5.26509 5.27775 5.32306 5.35336 5.39089 5.53903 5.58125 5.69005 5.74554 5.84008 6.01060 6.16720 6.34999 6.54712 7.01486 7.54627 9.03186 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.046500 B = 0.014330 C = 0.013591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.004190 B = 1953.457009 C = 2059.737312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.941 3.059 4 H -0.287 1.287 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.048 0.952 9 C 0.062 3.938 10 C -0.083 4.083 11 C -0.103 4.103 12 C -0.107 4.107 13 C -0.103 4.103 14 C -0.078 4.078 15 C -0.087 4.087 16 C -0.100 4.100 17 C -0.082 4.082 18 H 0.256 0.744 19 H -0.022 1.022 20 H 0.052 0.948 21 H 0.030 0.970 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 -8.491 3.948 9.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.767 3.233 4 H -0.213 1.213 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.044 3.956 10 C -0.102 4.102 11 C -0.140 4.140 12 C -0.144 4.144 13 C -0.140 4.140 14 C -0.097 4.097 15 C -0.124 4.124 16 C -0.137 4.137 17 C -0.120 4.120 18 H 0.065 0.935 19 H -0.004 1.004 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.566 -8.372 3.948 9.606 hybrid contribution 0.127 1.506 -0.340 1.549 sum 2.693 -6.867 3.609 8.211 Atomic orbital electron populations 1.70007 1.07022 1.26583 1.52257 1.25626 0.95475 1.01807 0.95552 0.85879 0.78576 0.80149 0.78674 1.21316 1.19780 1.19972 1.21348 0.92670 0.92038 1.48772 0.93387 1.18407 0.92722 0.92010 0.92508 1.20746 0.97553 0.96136 0.95788 1.21317 0.97461 0.95437 0.99808 1.21303 0.97407 0.96362 0.99296 1.21368 0.97818 0.96872 0.97978 1.20856 0.96674 0.95401 0.96735 1.20938 0.96977 1.00408 0.94088 1.21148 0.96881 0.99143 0.96511 1.20925 0.96704 0.97958 0.96364 0.93460 1.00429 0.92931 0.95103 0.92765 0.92461 0.90383 0.94011 0.90931 0.94698 0.91756 0.94539 0.93601 0.90548 0.95515 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.24 11.32 21.45 0.24 -54.00 16 2 C 0.01 0.74 5.32 84.66 0.45 1.19 16 3 Si 0.94 44.62 29.54 68.60 2.03 46.64 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.51 -28.25 7.11 25.47 0.18 -28.07 16 8 H 0.05 2.64 6.97 -2.91 -0.02 2.62 16 9 C 0.06 3.13 1.70 -11.81 -0.02 3.11 16 10 C -0.08 -3.89 2.24 -11.36 -0.03 -3.92 16 11 C -0.10 -3.97 5.33 30.13 0.16 -3.81 16 12 C -0.11 -3.38 5.09 30.12 0.15 -3.23 16 13 C -0.10 -3.48 5.38 30.26 0.16 -3.32 16 14 C -0.08 -3.20 2.32 -11.35 -0.03 -3.22 16 15 C -0.09 -3.16 4.88 29.83 0.15 -3.01 16 16 C -0.10 -3.45 4.97 29.87 0.15 -3.30 16 17 C -0.08 -3.44 4.94 29.97 0.15 -3.29 16 18 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 19 H -0.02 -1.30 8.17 -2.20 -0.02 -1.32 16 20 H 0.05 2.91 6.09 -1.76 -0.01 2.90 16 21 H 0.03 1.25 8.19 -2.05 -0.02 1.23 16 22 H 0.05 1.89 8.19 -2.06 -0.02 1.88 16 23 H 0.06 1.56 8.28 -1.47 -0.01 1.55 16 24 H 0.08 2.21 5.46 -2.75 -0.02 2.20 16 25 H 0.04 1.46 8.18 -2.17 -0.02 1.44 16 26 H 0.07 2.03 8.18 -2.14 -0.02 2.01 16 27 H 0.03 1.47 8.24 -1.76 -0.01 1.46 16 28 H 0.06 1.93 8.23 -1.79 -0.01 1.91 16 29 H 0.04 1.45 7.28 -1.99 -0.01 1.43 16 30 H 0.05 1.45 8.30 -1.33 -0.01 1.44 16 31 H 0.08 2.25 5.70 -2.56 -0.01 2.24 16 32 H 0.03 1.26 7.66 -2.13 -0.02 1.24 16 33 H 0.04 1.59 8.23 -1.83 -0.02 1.57 16 Total: -1.00 -60.14 241.11 4.85 -55.29 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: 1.10 Total: 2.95 kcal Atomic # 6 Polarization: -52.36 SS G_CDS: 1.48 Total: -50.88 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.24 Total: -54.00 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -60.14 4.85 -55.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213851790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.393 kcal (2) G-P(sol) polarization free energy of solvation -60.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds