Wall clock time and date at job start Mon Mar 30 2020 02:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.50697 * 109.47201 * 120.00696 * 2 1 3 5 5 N 1.31011 * 125.17659 * 300.01982 * 4 2 1 6 6 C 1.33015 * 109.98253 * 179.97438 * 5 4 2 7 7 C 1.39625 * 107.46345 * 359.97438 * 6 5 4 8 8 C 1.40059 * 127.06321 * 179.73731 * 7 6 5 9 9 H 1.08000 * 120.00003 * 180.02562 * 8 7 6 10 10 C 1.40071 * 120.00047 * 0.02957 * 8 7 6 11 11 N 1.30857 * 119.99880 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00317 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47295 * 89.99910 * 12 10 8 14 14 H 1.48498 * 109.47006 * 209.99862 * 12 10 8 15 15 H 1.48504 * 109.46842 * 329.99933 * 12 10 8 16 16 N 1.35079 * 125.17728 * 119.99956 * 4 2 1 17 17 C 1.46495 * 126.48370 * 0.02562 * 16 4 2 18 18 H 1.08993 * 109.46720 * 299.99404 * 1 2 3 19 19 H 1.08991 * 109.46856 * 59.99600 * 1 2 3 20 20 H 1.08996 * 109.46684 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46816 * 240.00425 * 2 1 3 22 22 H 1.08993 * 109.46933 * 180.02562 * 3 2 1 23 23 H 1.08991 * 109.47403 * 300.00705 * 3 2 1 24 24 H 1.09002 * 109.46488 * 60.00231 * 3 2 1 25 25 H 1.08004 * 126.27117 * 180.02562 * 6 5 4 26 26 H 0.96995 * 120.00274 * 180.02562 * 11 10 8 27 27 H 1.09007 * 109.47227 * 270.02269 * 17 16 4 28 28 H 1.08998 * 109.47329 * 30.02015 * 17 16 4 29 29 H 1.09004 * 109.47239 * 150.02680 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.7789 -0.3528 2.4649 6 6 2.3708 -1.1907 3.3116 7 6 3.0465 -2.1470 2.5511 8 6 3.8104 -3.2195 3.0287 9 1 4.2872 -3.8946 2.3336 10 6 3.9559 -3.4164 4.4078 11 7 3.3785 -2.5981 5.2501 12 14 4.9741 -4.8471 5.0448 13 1 6.3855 -4.4158 5.2089 14 1 4.4369 -5.2920 6.3558 15 1 4.9092 -5.9708 4.0761 16 7 2.8123 -1.8135 1.2281 17 6 3.3146 -2.5228 0.0489 18 1 -0.3632 0.5137 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3632 -1.0276 0.0005 21 1 1.8934 -0.5138 -0.8901 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9564 -0.8898 24 1 1.6767 1.9562 0.8901 25 1 2.3346 -1.1409 4.3899 26 1 3.4795 -2.7342 6.2051 27 1 2.5999 -3.2918 -0.2444 28 1 3.4456 -1.8169 -0.7713 29 1 4.2719 -2.9875 0.2848 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218695157.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:35 Heat of formation + Delta-G solvation = 32.762312 kcal Electronic energy + Delta-G solvation = -12213.332003 eV Core-core repulsion = 10136.600333 eV Total energy + Delta-G solvation = -2076.731669 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.95670 -34.64502 -33.29099 -32.44217 -28.32179 -26.57238 -25.64911 -24.59396 -21.36138 -19.79047 -17.78109 -16.83523 -15.56331 -14.81566 -14.26069 -13.73190 -13.39155 -12.57782 -12.50896 -12.38494 -11.73058 -11.56617 -11.48155 -11.21279 -11.17380 -10.67747 -10.58278 -10.53867 -10.21672 -9.99888 -9.33025 -8.09675 -7.98239 -6.78866 -6.57275 -4.16392 2.98411 3.10425 3.13872 3.72625 3.95049 4.41452 4.77076 5.45212 5.48144 5.53003 5.66426 5.83120 6.01131 6.07913 6.11497 6.19096 6.34621 6.44415 6.47489 6.79608 6.84075 7.11609 7.21909 7.72021 7.91587 8.06040 8.56404 8.95250 9.11455 9.19172 10.08027 10.38519 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.064505 B = 0.010246 C = 0.009409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.969419 B = 2732.195433 C = 2975.096303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.012 3.988 3 C -0.133 4.133 4 C 0.080 3.920 5 N -0.476 5.476 6 C -0.133 4.133 7 C 0.174 3.826 8 C -0.444 4.444 9 H 0.069 0.931 10 C 0.072 3.928 11 N -0.803 5.803 12 Si 0.924 3.076 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.266 1.266 16 N -0.497 5.497 17 C 0.096 3.904 18 H 0.062 0.938 19 H 0.045 0.955 20 H 0.047 0.953 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.062 0.938 25 H 0.184 0.816 26 H 0.277 0.723 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 0.170 -7.120 7.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.008 4.008 3 C -0.191 4.191 4 C -0.173 4.173 5 N -0.195 5.195 6 C -0.282 4.282 7 C 0.063 3.937 8 C -0.480 4.480 9 H 0.087 0.913 10 C -0.144 4.144 11 N -0.431 5.431 12 Si 0.749 3.251 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.190 1.190 16 N -0.191 5.191 17 C -0.048 4.048 18 H 0.081 0.919 19 H 0.064 0.936 20 H 0.066 0.934 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.200 0.800 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.521 0.865 -6.768 6.843 hybrid contribution 1.076 -1.531 0.052 1.872 sum 0.555 -0.666 -6.716 6.772 Atomic orbital electron populations 1.21735 0.95063 1.01207 1.01092 1.19059 0.95039 0.94598 0.92136 1.21739 1.00493 0.95791 1.01106 1.21881 1.07023 0.93837 0.94557 1.69361 1.22753 1.28393 0.98983 1.23368 1.08583 0.97144 0.99081 1.19031 0.97927 0.96849 0.79936 1.18341 1.28180 1.09565 0.91912 0.91318 1.25634 0.95276 0.97192 0.96344 1.69622 1.35891 1.33966 1.03643 0.86065 0.79786 0.80745 0.78515 1.19672 1.20205 1.19020 1.44839 1.43591 1.24803 1.05831 1.21452 0.99547 0.96323 0.87496 0.91865 0.93628 0.93433 0.92233 0.93440 0.93634 0.91849 0.79959 0.91144 0.93206 0.91976 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.18 37.16 0.34 -1.92 15 2 C 0.01 0.23 3.24 -91.77 -0.30 -0.07 15 3 C -0.13 -2.26 9.18 37.16 0.34 -1.92 15 4 C 0.08 1.93 6.38 -154.96 -0.99 0.94 15 5 N -0.48 -13.09 11.17 -9.76 -0.11 -13.20 15 6 C -0.13 -3.91 10.88 -16.52 -0.18 -4.09 15 7 C 0.17 4.90 6.74 -83.68 -0.56 4.33 15 8 C -0.44 -12.09 9.05 -38.21 -0.35 -12.44 15 9 H 0.07 1.75 7.30 -52.49 -0.38 1.37 15 10 C 0.07 1.85 5.50 -17.28 -0.10 1.76 15 11 N -0.80 -21.58 10.35 55.56 0.57 -21.01 15 12 Si 0.92 19.21 29.56 -169.99 -5.03 14.19 15 13 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 14 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 15 H -0.27 -5.43 7.11 56.52 0.40 -5.02 15 16 N -0.50 -12.26 3.20 -118.33 -0.38 -12.64 15 17 C 0.10 1.82 10.62 59.84 0.64 2.45 15 18 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.06 1.00 6.68 -51.93 -0.35 0.66 15 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.18 5.55 5.78 -52.48 -0.30 5.25 15 26 H 0.28 6.77 8.30 -40.82 -0.34 6.43 15 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.06 0.99 7.02 -51.93 -0.36 0.63 15 29 H 0.07 1.30 7.50 -51.93 -0.39 0.91 15 LS Contribution 245.92 15.07 3.71 3.71 Total: -1.00 -30.70 245.92 -6.26 -36.96 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.88 Total: 2.94 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -1.15 Total: -10.95 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.09 Total: -46.84 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.70 -6.26 -36.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218695157.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.727 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds