Wall clock time and date at job start Mon Mar 30 2020 02:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.50697 * 109.47201 * 120.00696 * 2 1 3 5 5 N 1.31011 * 125.17659 * 300.01982 * 4 2 1 6 6 C 1.33015 * 109.98253 * 179.97438 * 5 4 2 7 7 C 1.39625 * 107.46345 * 359.97438 * 6 5 4 8 8 C 1.40059 * 127.06321 * 179.73731 * 7 6 5 9 9 H 1.08000 * 120.00003 * 180.02562 * 8 7 6 10 10 C 1.40071 * 120.00047 * 0.02957 * 8 7 6 11 11 N 1.30857 * 119.99880 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00317 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47295 * 89.99910 * 12 10 8 14 14 H 1.48498 * 109.47006 * 209.99862 * 12 10 8 15 15 H 1.48504 * 109.46842 * 329.99933 * 12 10 8 16 16 N 1.35079 * 125.17728 * 119.99956 * 4 2 1 17 17 C 1.46495 * 126.48370 * 0.02562 * 16 4 2 18 18 H 1.08993 * 109.46720 * 299.99404 * 1 2 3 19 19 H 1.08991 * 109.46856 * 59.99600 * 1 2 3 20 20 H 1.08996 * 109.46684 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46816 * 240.00425 * 2 1 3 22 22 H 1.08993 * 109.46933 * 180.02562 * 3 2 1 23 23 H 1.08991 * 109.47403 * 300.00705 * 3 2 1 24 24 H 1.09002 * 109.46488 * 60.00231 * 3 2 1 25 25 H 1.08004 * 126.27117 * 180.02562 * 6 5 4 26 26 H 0.96995 * 120.00274 * 180.02562 * 11 10 8 27 27 H 1.09007 * 109.47227 * 270.02269 * 17 16 4 28 28 H 1.08998 * 109.47329 * 30.02015 * 17 16 4 29 29 H 1.09004 * 109.47239 * 150.02680 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.7789 -0.3528 2.4649 6 6 2.3708 -1.1907 3.3116 7 6 3.0465 -2.1470 2.5511 8 6 3.8104 -3.2195 3.0287 9 1 4.2872 -3.8946 2.3336 10 6 3.9559 -3.4164 4.4078 11 7 3.3785 -2.5981 5.2501 12 14 4.9741 -4.8471 5.0448 13 1 6.3855 -4.4158 5.2089 14 1 4.4369 -5.2920 6.3558 15 1 4.9092 -5.9708 4.0761 16 7 2.8123 -1.8135 1.2281 17 6 3.3146 -2.5228 0.0489 18 1 -0.3632 0.5137 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3632 -1.0276 0.0005 21 1 1.8934 -0.5138 -0.8901 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9564 -0.8898 24 1 1.6767 1.9562 0.8901 25 1 2.3346 -1.1409 4.3899 26 1 3.4795 -2.7342 6.2051 27 1 2.5999 -3.2918 -0.2444 28 1 3.4456 -1.8169 -0.7713 29 1 4.2719 -2.9875 0.2848 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218695157.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:35 Heat of formation + Delta-G solvation = 13.564976 kcal Electronic energy + Delta-G solvation = -12214.164461 eV Core-core repulsion = 10136.600333 eV Total energy + Delta-G solvation = -2077.564128 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.89878 -36.27418 -35.14046 -34.29901 -30.29873 -27.92038 -27.34955 -26.53448 -23.05208 -21.79495 -19.55104 -18.77601 -17.42637 -16.52025 -16.02187 -15.32027 -14.95606 -14.36228 -14.13131 -13.97204 -13.32832 -13.23803 -13.04758 -12.97382 -12.74623 -12.49561 -12.20794 -11.97503 -11.79703 -11.63035 -11.21853 -10.14430 -9.93048 -8.83356 -8.50557 -6.23356 1.30344 1.40146 1.55548 1.87341 2.20474 2.64690 2.77984 3.39969 3.93808 4.10041 4.22108 4.38792 4.53763 4.61306 4.73118 4.88503 4.89135 5.05312 5.09078 5.16540 5.18834 5.46882 5.51255 5.72852 5.88801 6.04069 6.55084 6.90308 7.01938 7.30480 8.04876 8.47427 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.064505 B = 0.010246 C = 0.009409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.969419 B = 2732.195433 C = 2975.096303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.006 3.994 3 C -0.127 4.127 4 C 0.102 3.898 5 N -0.513 5.513 6 C -0.182 4.182 7 C 0.147 3.853 8 C -0.474 4.474 9 H 0.080 0.920 10 C 0.023 3.977 11 N -0.838 5.838 12 Si 1.005 2.995 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.256 1.256 16 N -0.506 5.506 17 C 0.088 3.912 18 H 0.040 0.960 19 H 0.089 0.911 20 H 0.039 0.961 21 H 0.091 0.909 22 H 0.040 0.960 23 H 0.089 0.911 24 H 0.040 0.960 25 H 0.159 0.841 26 H 0.284 0.716 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 -0.520 -9.403 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 C -0.185 4.185 4 C -0.155 4.155 5 N -0.232 5.232 6 C -0.328 4.328 7 C 0.035 3.965 8 C -0.509 4.509 9 H 0.098 0.902 10 C -0.190 4.190 11 N -0.467 5.467 12 Si 0.825 3.175 13 H -0.188 1.188 14 H -0.195 1.195 15 H -0.179 1.179 16 N -0.199 5.199 17 C -0.054 4.054 18 H 0.059 0.941 19 H 0.108 0.892 20 H 0.058 0.942 21 H 0.109 0.891 22 H 0.059 0.941 23 H 0.108 0.892 24 H 0.059 0.941 25 H 0.176 0.824 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.009 0.170 -9.057 9.059 hybrid contribution 0.854 -1.228 0.651 1.631 sum 0.845 -1.058 -8.406 8.515 Atomic orbital electron populations 1.21681 0.93590 1.01069 1.02167 1.19426 0.96250 0.95321 0.90393 1.21685 1.00034 0.94644 1.02172 1.23111 1.04117 0.92759 0.95492 1.69302 1.24305 1.29219 1.00370 1.23168 1.11452 0.99411 0.98797 1.19298 0.98394 0.97151 0.81638 1.18726 1.29044 1.10002 0.93109 0.90209 1.26770 0.96080 1.00008 0.96108 1.69760 1.36900 1.35757 1.04255 0.84859 0.77838 0.76804 0.77974 1.18821 1.19478 1.17926 1.45196 1.43365 1.25068 1.06253 1.21809 0.99945 0.97395 0.86285 0.94099 0.89240 0.94210 0.89124 0.94129 0.89249 0.94101 0.82408 0.90540 0.91472 0.88410 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.18 71.99 0.66 -3.31 15 2 C 0.01 0.22 3.24 -11.54 -0.04 0.18 15 3 C -0.13 -3.96 9.18 71.98 0.66 -3.30 15 4 C 0.10 4.88 6.38 137.97 0.88 5.76 15 5 N -0.51 -29.10 11.17 -184.80 -2.06 -31.17 15 6 C -0.18 -11.25 10.88 84.85 0.92 -10.32 15 7 C 0.15 8.53 6.74 38.88 0.26 8.79 15 8 C -0.47 -26.20 9.05 23.16 0.21 -25.99 15 9 H 0.08 4.06 7.30 -2.91 -0.02 4.04 15 10 C 0.02 1.20 5.50 85.28 0.47 1.67 15 11 N -0.84 -46.84 10.35 21.86 0.23 -46.62 15 12 Si 1.01 39.30 29.56 68.60 2.03 41.33 15 13 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 14 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 15 H -0.26 -9.48 7.11 99.48 0.71 -8.78 15 16 N -0.51 -24.69 3.20 -528.27 -1.69 -26.37 15 17 C 0.09 3.09 10.62 127.77 1.36 4.45 15 18 H 0.04 1.45 8.14 -2.39 -0.02 1.43 15 19 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 20 H 0.04 1.28 8.14 -2.39 -0.02 1.26 15 21 H 0.09 2.60 6.68 -2.39 -0.02 2.59 15 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 25 H 0.16 10.34 5.78 -2.91 -0.02 10.32 15 26 H 0.28 14.34 8.30 -92.71 -0.77 13.57 15 27 H 0.07 2.13 8.14 -2.38 -0.02 2.12 15 28 H 0.10 2.71 7.02 -2.39 -0.02 2.69 15 29 H 0.07 2.54 7.50 -2.39 -0.02 2.52 15 Total: -1.00 -70.08 245.92 5.01 -65.07 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 1.13 Total: 19.84 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 5.39 Total: -22.08 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -3.53 Total: -104.16 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -70.08 5.01 -65.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218695157.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.632 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds