Wall clock time and date at job start Mon Mar 30 2020 02:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 C 1.53006 * 109.47334 * 119.99701 * 2 1 3 5 5 C 1.50701 * 109.46594 * 64.99867 * 4 2 1 6 6 N 1.31005 * 125.18082 * 304.97680 * 5 4 2 7 7 C 1.33024 * 109.98161 * 180.02562 * 6 5 4 8 8 C 1.39622 * 107.46211 * 359.97438 * 7 6 5 9 9 C 1.40062 * 127.05987 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99888 * 179.97438 * 9 8 7 11 11 C 1.40072 * 119.99685 * 359.95753 * 9 8 7 12 12 N 1.30848 * 120.00598 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99627 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47120 * 90.00105 * 13 11 9 15 15 H 1.48500 * 109.46912 * 210.00026 * 13 11 9 16 16 H 1.48502 * 109.47062 * 329.99951 * 13 11 9 17 17 N 1.35074 * 125.17432 * 125.00293 * 5 4 2 18 18 H 0.97005 * 126.48120 * 359.71668 * 17 5 4 19 19 H 1.08995 * 109.46816 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47098 * 299.99903 * 1 2 3 21 21 H 1.08999 * 109.46823 * 60.00390 * 1 2 3 22 22 H 1.09003 * 109.47346 * 239.99701 * 2 1 3 23 23 H 1.09001 * 109.47438 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.46889 * 299.99569 * 3 2 1 25 25 H 1.08994 * 109.47372 * 59.99379 * 3 2 1 26 26 H 1.08994 * 109.46721 * 305.00642 * 4 2 1 27 27 H 1.08996 * 109.47352 * 185.00000 * 4 2 1 28 28 H 1.08004 * 126.26823 * 179.97438 * 7 6 5 29 29 H 0.96995 * 120.00436 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1889 6 7 0.4175 -2.6141 1.0334 7 6 0.4114 -3.9443 1.0233 8 6 1.7311 -4.3706 1.1842 9 6 2.1913 -5.6926 1.2315 10 1 3.2445 -5.8935 1.3605 11 6 1.2853 -6.7542 1.1120 12 7 0.0090 -6.5109 0.9566 13 14 1.8989 -8.5174 1.1759 14 1 1.8894 -8.9942 2.5822 15 1 1.0121 -9.3802 0.3547 16 1 3.2831 -8.5795 0.6415 17 7 2.4914 -3.2183 1.2875 18 1 3.4532 -3.1705 1.4040 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 3.1301 1.4426 -0.0005 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6054 -0.2617 2.1369 27 1 3.1264 -0.6443 1.2952 28 1 -0.4558 -4.5783 0.9113 29 1 -0.6183 -7.2460 0.8734 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218695361.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:01 Heat of formation + Delta-G solvation = 5.311161 kcal Electronic energy + Delta-G solvation = -11951.750109 eV Core-core repulsion = 9873.828069 eV Total energy + Delta-G solvation = -2077.922040 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.81112 -37.08444 -35.44410 -32.82059 -30.93773 -28.56943 -27.80855 -25.43448 -21.91934 -21.41457 -20.72709 -19.11987 -17.61468 -16.33698 -15.92312 -15.39088 -14.79176 -14.47484 -14.32454 -13.80115 -13.36014 -13.04458 -12.90515 -12.80869 -12.70559 -12.45126 -12.05084 -11.65563 -11.56576 -11.49156 -11.19719 -10.27994 -10.00272 -8.87744 -8.50976 -6.24633 1.31362 1.41424 1.56489 1.89064 2.22107 2.77155 2.97867 3.39646 4.02782 4.14505 4.19491 4.50133 4.76682 4.86204 4.95178 4.96624 5.14769 5.15339 5.21130 5.31545 5.37526 5.58168 5.68646 5.75957 5.89391 6.02110 6.55976 6.89634 7.00485 7.45294 8.02967 8.46692 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.089200 B = 0.008235 C = 0.007756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.827548 B = 3399.266227 C = 3609.323490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.005 4.005 5 C 0.097 3.903 6 N -0.497 5.497 7 C -0.180 4.180 8 C 0.149 3.851 9 C -0.479 4.479 10 H 0.080 0.920 11 C 0.025 3.975 12 N -0.836 5.836 13 Si 1.005 2.995 14 H -0.264 1.264 15 H -0.270 1.270 16 H -0.257 1.257 17 N -0.604 5.604 18 H 0.411 0.589 19 H 0.059 0.941 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.160 0.840 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.468 6.651 -0.532 8.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 C -0.193 4.193 4 C -0.044 4.044 5 C -0.161 4.161 6 N -0.218 5.218 7 C -0.327 4.327 8 C 0.036 3.964 9 C -0.514 4.514 10 H 0.098 0.902 11 C -0.188 4.188 12 N -0.464 5.464 13 Si 0.826 3.174 14 H -0.189 1.189 15 H -0.194 1.194 16 H -0.181 1.181 17 N -0.216 5.216 18 H 0.248 0.752 19 H 0.078 0.922 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.177 0.823 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.450 7.083 -0.648 8.390 hybrid contribution 0.980 -1.469 0.147 1.772 sum 5.430 5.614 -0.501 7.827 Atomic orbital electron populations 1.21977 0.95616 1.03047 1.00422 1.20941 0.96229 0.96534 0.96404 1.21780 1.01225 0.93915 1.02399 1.19875 1.00614 0.84836 0.99098 1.23109 0.86119 0.91794 1.15077 1.69288 1.21340 1.12288 1.18849 1.23237 0.97170 0.89604 1.22653 1.19294 0.91043 0.86904 0.99185 1.18755 0.95737 0.88760 1.48129 0.90226 1.26735 0.94223 1.05832 0.92045 1.69739 1.04008 1.35358 1.37296 0.84854 0.78994 0.74482 0.79107 1.18867 1.19429 1.18105 1.42947 1.09408 1.06204 1.63040 0.75227 0.92170 0.93157 0.93098 0.93485 0.91721 0.92009 0.91889 0.90709 0.89652 0.82281 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 8.91 71.98 0.64 -4.63 15 2 C -0.08 -2.54 2.91 -10.79 -0.03 -2.57 15 3 C -0.14 -3.01 9.19 71.98 0.66 -2.35 15 4 C -0.01 -0.17 5.32 29.85 0.16 -0.01 15 5 C 0.10 4.49 7.36 137.97 1.01 5.50 15 6 N -0.50 -27.00 8.46 -184.80 -1.56 -28.56 15 7 C -0.18 -10.80 10.88 84.85 0.92 -9.88 15 8 C 0.15 8.42 6.96 38.88 0.27 8.69 15 9 C -0.48 -26.09 9.45 23.16 0.22 -25.87 15 10 H 0.08 4.00 7.85 -2.91 -0.02 3.98 15 11 C 0.02 1.27 5.50 85.28 0.47 1.74 15 12 N -0.84 -45.83 10.35 21.86 0.23 -45.60 15 13 Si 1.01 38.87 29.56 68.60 2.03 40.90 15 14 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 15 H -0.27 -10.01 7.11 99.48 0.71 -9.30 15 16 H -0.26 -9.50 7.11 99.48 0.71 -8.80 15 17 N -0.60 -28.60 6.23 -178.78 -1.11 -29.71 15 18 H 0.41 16.07 8.96 -92.70 -0.83 15.24 15 19 H 0.06 2.61 5.47 -2.39 -0.01 2.60 15 20 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 21 H 0.05 1.53 8.14 -2.39 -0.02 1.51 15 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 15 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 15 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 28 H 0.16 10.13 5.78 -2.91 -0.02 10.11 15 29 H 0.28 14.11 8.30 -92.71 -0.77 13.34 15 Total: -1.00 -65.37 243.89 4.22 -61.16 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.31 Total: 31.20 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 4.33 Total: -29.39 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -2.45 Total: -103.87 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -65.37 4.22 -61.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218695361.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.468 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds