Wall clock time and date at job start Mon Mar 30 2020 01:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46907 * 110.01860 * 36.70318 * 3 2 1 5 5 C 1.46895 * 110.99969 * 59.29294 * 4 3 2 6 6 C 1.50700 * 109.47051 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99988 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00047 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99792 * 359.72305 * 8 6 5 10 10 Si 1.86795 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47163 * 59.99902 * 10 8 6 12 12 H 1.48495 * 109.47159 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47290 * 299.99897 * 10 8 6 14 14 C 1.54268 * 110.03047 * 158.08885 * 3 2 1 15 15 C 1.54971 * 104.15564 * 95.75314 * 14 3 2 16 16 C 1.54893 * 102.77761 * 37.89210 * 15 14 3 17 17 C 1.53870 * 110.03255 * 275.30996 * 3 2 1 18 18 H 1.00902 * 110.99728 * 295.34476 * 4 3 2 19 19 H 1.09004 * 109.47210 * 60.00310 * 5 4 3 20 20 H 1.08997 * 109.47605 * 300.00670 * 5 4 3 21 21 H 0.97000 * 119.99468 * 179.97438 * 9 8 6 22 22 H 1.08997 * 110.48809 * 214.39986 * 14 3 2 23 23 H 1.08994 * 110.48838 * 337.04965 * 14 3 2 24 24 H 1.08998 * 110.72347 * 279.57356 * 15 14 3 25 25 H 1.09005 * 110.76247 * 156.22201 * 15 14 3 26 26 H 1.08996 * 110.48805 * 203.40605 * 16 15 14 27 27 H 1.08997 * 110.48818 * 80.75506 * 16 15 14 28 28 H 1.09000 * 110.03374 * 359.95287 * 17 3 2 29 29 H 1.08997 * 110.03294 * 121.38635 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.1114 -1.1058 -0.8250 5 6 2.6336 -0.9900 -2.2092 6 6 3.1686 -2.1400 -3.0231 7 1 3.8000 -2.8828 -2.5584 8 6 2.8519 -2.2438 -4.3611 9 7 2.0785 -1.3423 -4.9256 10 14 3.5145 -3.6696 -5.3697 11 1 3.0390 -4.9506 -4.7880 12 1 3.0315 -3.5526 -6.7691 13 1 4.9991 -3.6396 -5.3538 14 6 3.1358 1.3456 -0.5409 15 6 3.4068 2.1861 0.7326 16 6 3.9660 1.1355 1.7239 17 6 3.1352 -0.1329 1.4394 18 1 2.8567 -1.9977 -0.4279 19 1 2.9814 -0.0494 -2.6362 20 1 1.5439 -1.0132 -2.2206 21 1 1.8561 -1.4152 -5.8670 22 1 4.0581 1.1955 -1.1021 23 1 2.3830 1.8280 -1.1641 24 1 2.4820 2.6210 1.1116 25 1 4.1465 2.9616 0.5336 26 1 3.8188 1.4651 2.7524 27 1 5.0224 0.9512 1.5288 28 1 2.3010 -0.1974 2.1381 29 1 3.7645 -1.0186 1.5259 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222262760.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:33 Heat of formation + Delta-G solvation = -7.937006 kcal Electronic energy + Delta-G solvation = -12001.139590 eV Core-core repulsion = 9922.643066 eV Total energy + Delta-G solvation = -2078.496524 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.35299 -36.87905 -35.92724 -34.08348 -30.06740 -29.51809 -27.15137 -23.90962 -22.60567 -21.48477 -18.74300 -18.25054 -16.78171 -16.55761 -16.01864 -15.33316 -14.88005 -14.56502 -14.42130 -14.01855 -13.78622 -13.36937 -13.10185 -12.64379 -12.40617 -12.19126 -12.15473 -11.92192 -11.88828 -11.61943 -11.35435 -11.25524 -10.68446 -9.54965 -8.23667 -6.35256 1.42384 1.45747 1.53575 1.63234 1.67940 2.39991 2.85932 3.10987 3.46149 3.65665 3.75657 4.27589 4.54121 4.57447 4.70287 4.86522 4.96403 4.98476 5.14062 5.17264 5.26439 5.31498 5.34384 5.57979 5.60294 5.96705 6.27014 6.45576 6.56491 6.83955 7.35787 8.87893 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.051295 B = 0.009134 C = 0.008719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.726983 B = 3064.650502 C = 3210.724349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.205 3.795 3 C 0.194 3.806 4 N -0.645 5.645 5 C 0.203 3.797 6 C -0.537 4.537 7 H 0.073 0.927 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.974 3.026 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.262 1.262 14 C -0.107 4.107 15 C -0.118 4.118 16 C -0.109 4.109 17 C -0.103 4.103 18 H 0.342 0.658 19 H 0.018 0.982 20 H -0.048 1.048 21 H 0.264 0.736 22 H 0.089 0.911 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.571 3.998 11.962 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.114 4.114 3 C 0.098 3.902 4 N -0.274 5.274 5 C 0.076 3.924 6 C -0.575 4.575 7 H 0.091 0.909 8 C -0.198 4.198 9 N -0.576 5.576 10 Si 0.798 3.202 11 H -0.193 1.193 12 H -0.213 1.213 13 H -0.186 1.186 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.147 4.147 17 C -0.142 4.142 18 H 0.161 0.839 19 H 0.036 0.964 20 H -0.031 1.031 21 H 0.073 0.927 22 H 0.108 0.892 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.392 4.325 11.658 13.554 hybrid contribution -0.939 -0.890 -1.100 1.698 sum 4.453 3.436 10.558 11.963 Atomic orbital electron populations 1.81045 1.15078 1.09931 1.10828 1.31523 0.97125 0.91738 0.91010 1.20078 0.76660 0.95600 0.97851 1.61171 1.59412 1.04294 1.02537 1.19312 0.90864 0.97221 0.85012 1.21536 1.30933 1.10114 0.94936 0.90890 1.25977 0.95193 0.99308 0.99299 1.70105 1.37692 1.37109 1.12743 0.85364 0.79174 0.78781 0.76872 1.19326 1.21267 1.18604 1.22487 1.01273 0.91714 0.99127 1.22550 1.01632 0.97935 0.93462 1.22319 0.99977 0.92494 0.99866 1.22276 1.00426 1.01966 0.89520 0.83948 0.96420 1.03072 0.92713 0.89207 0.93762 0.91625 0.88895 0.89005 0.89690 0.90904 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -21.55 18.54 20.01 0.37 -21.18 15 2 C 0.21 8.05 12.29 89.44 1.10 9.15 15 3 C 0.19 6.36 0.78 2.44 0.00 6.36 15 4 N -0.64 -25.45 5.91 -479.55 -2.83 -28.28 15 5 C 0.20 10.57 4.88 85.56 0.42 10.98 15 6 C -0.54 -29.84 9.32 25.60 0.24 -29.60 15 7 H 0.07 3.84 7.81 -2.91 -0.02 3.81 15 8 C 0.00 0.03 5.46 84.66 0.46 0.49 15 9 N -0.94 -57.09 13.29 21.45 0.28 -56.80 15 10 Si 0.97 43.85 29.54 68.60 2.03 45.88 15 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 12 H -0.29 -12.79 7.11 99.48 0.71 -12.09 15 13 H -0.26 -11.15 7.11 99.48 0.71 -10.44 15 14 C -0.11 -3.27 4.78 31.70 0.15 -3.12 15 15 C -0.12 -2.46 6.91 31.92 0.22 -2.24 15 16 C -0.11 -1.92 6.83 31.67 0.22 -1.70 15 17 C -0.10 -2.35 6.18 31.32 0.19 -2.16 15 18 H 0.34 12.86 8.73 -89.69 -0.78 12.08 15 19 H 0.02 0.98 7.04 -2.38 -0.02 0.97 15 20 H -0.05 -2.86 7.11 -2.39 -0.02 -2.88 15 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 15 22 H 0.09 2.89 7.84 -2.39 -0.02 2.87 15 23 H 0.04 1.52 7.82 -2.39 -0.02 1.50 15 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 15 25 H 0.09 1.58 8.14 -2.38 -0.02 1.56 15 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 15 27 H 0.08 1.36 8.14 -2.39 -0.02 1.35 15 28 H 0.07 1.56 7.66 -2.39 -0.02 1.55 15 29 H 0.10 2.09 7.91 -2.39 -0.02 2.07 15 Total: -1.00 -67.05 248.83 3.21 -63.84 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.36 Total: 8.37 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 3.00 Total: -11.83 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -2.18 Total: -106.26 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -67.05 3.21 -63.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222262760.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.903 kcal (2) G-P(sol) polarization free energy of solvation -67.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds