Wall clock time and date at job start Mon Mar 30 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32747 * 118.40100 * 2 1 4 4 C 1.50701 * 119.69440 * 0.43110 * 3 2 1 5 5 C 1.50699 * 109.47053 * 94.41533 * 4 3 2 6 6 H 1.08001 * 120.00194 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99836 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00346 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00228 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47025 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47341 * 119.99342 * 9 7 5 12 12 H 1.48493 * 109.47199 * 239.99768 * 9 7 5 13 13 C 1.46668 * 120.60595 * 180.40601 * 3 2 1 14 14 O 1.21331 * 121.12494 * 168.55170 * 13 3 2 15 15 C 1.51485 * 117.74898 * 348.57682 * 13 3 2 16 16 C 1.53544 * 107.29110 * 41.92317 * 15 13 3 17 17 C 1.49983 * 118.40295 * 179.72678 * 2 1 3 18 18 H 1.09002 * 109.47273 * 65.01391 * 1 2 3 19 19 H 1.08998 * 109.47593 * 305.01823 * 1 2 3 20 20 H 1.08999 * 109.47572 * 185.01479 * 1 2 3 21 21 H 1.09001 * 109.46798 * 214.41384 * 4 3 2 22 22 H 1.09000 * 109.47033 * 334.41102 * 4 3 2 23 23 H 0.96991 * 120.00349 * 180.02562 * 8 7 5 24 24 H 1.08993 * 109.89073 * 161.36908 * 15 13 3 25 25 H 1.08994 * 109.88979 * 282.48064 * 15 13 3 26 26 H 1.09007 * 109.54538 * 57.90063 * 16 15 13 27 27 H 1.08997 * 109.54597 * 178.08313 * 16 15 13 28 28 H 1.08991 * 109.14298 * 278.51730 * 17 2 1 29 29 H 1.09005 * 109.13580 * 37.65064 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1384 1.1677 0.0000 4 6 1.3419 2.4470 0.0098 5 6 1.1787 2.9262 1.4293 6 1 1.6083 2.3607 2.2429 7 6 0.4800 4.0860 1.6893 8 7 -0.0436 4.7744 0.6985 9 14 0.2770 4.6796 3.4487 10 1 0.9541 3.7335 4.3716 11 1 0.8830 6.0280 3.5893 12 1 -1.1679 4.7489 3.7842 13 6 3.6039 1.2241 -0.0089 14 8 4.1902 2.2662 -0.2152 15 6 4.3609 -0.0627 0.2475 16 6 3.6456 -1.1759 -0.5313 17 6 2.2204 -1.3193 0.0063 18 1 -0.3634 0.4341 -0.9315 19 1 -0.3634 0.5897 0.8416 20 1 -0.3634 -1.0237 0.0898 21 1 1.8658 3.2056 -0.5717 22 1 0.3601 2.2672 -0.4282 23 1 -0.5348 5.5905 0.8814 24 1 5.3879 0.0348 -0.1041 25 1 4.3528 -0.2916 1.3131 26 1 3.6154 -0.9188 -1.5902 27 1 4.1818 -2.1157 -0.3994 28 1 2.2563 -1.7013 1.0264 29 1 1.6731 -2.0244 -0.6194 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238207516.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:31 Heat of formation + Delta-G solvation = -49.253765 kcal Electronic energy + Delta-G solvation = -12170.840717 eV Core-core repulsion = 10058.259813 eV Total energy + Delta-G solvation = -2112.580904 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.26516 -36.35108 -33.69190 -32.00319 -29.45811 -26.93501 -26.16870 -23.18737 -21.07957 -20.41214 -16.67593 -16.27960 -15.27683 -14.93857 -14.54076 -14.04361 -13.69010 -13.21400 -12.44996 -12.29843 -11.99677 -11.94181 -11.84914 -11.15216 -10.95419 -10.84198 -10.74064 -10.49214 -10.28876 -9.73002 -9.42383 -8.62981 -8.33217 -7.84161 -5.96962 -3.99278 1.84800 3.32804 3.39996 3.43829 3.66153 4.49881 4.71179 4.99514 5.10263 5.19111 5.38382 5.60734 5.71040 5.83153 5.90509 5.93651 6.04304 6.15318 6.26313 6.39866 6.65003 6.82741 7.11796 7.33696 7.64445 7.90150 7.99470 8.32075 8.43637 9.04942 9.63124 11.13533 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.042512 B = 0.011401 C = 0.010370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.485287 B = 2455.255848 C = 2699.391105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.161 4.161 4 C 0.055 3.945 5 C -0.504 4.504 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.389 3.611 14 O -0.453 6.453 15 C -0.169 4.169 16 C -0.111 4.111 17 C -0.086 4.086 18 H 0.067 0.933 19 H 0.083 0.917 20 H 0.047 0.953 21 H 0.030 0.970 22 H 0.033 0.967 23 H 0.260 0.740 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -12.456 -1.078 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.162 4.162 4 C 0.019 3.981 5 C -0.542 4.542 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.267 3.733 14 O -0.328 6.328 15 C -0.207 4.207 16 C -0.148 4.148 17 C -0.123 4.123 18 H 0.086 0.914 19 H 0.102 0.898 20 H 0.066 0.934 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.541 -11.751 -1.225 12.334 hybrid contribution -0.174 0.371 1.036 1.114 sum 3.368 -11.380 -0.189 11.869 Atomic orbital electron populations 1.20882 0.91913 1.00784 1.03485 1.21808 0.96244 0.93103 0.98499 1.22277 0.94135 0.98014 1.01762 1.18226 0.94004 0.88250 0.97659 1.21024 1.33558 1.07796 0.91852 0.92868 1.24987 0.95765 0.96529 0.97061 1.69964 1.36204 1.16402 1.30791 0.86526 0.77672 0.78804 0.84985 1.19791 1.20956 1.20988 1.22756 0.90099 0.88591 0.71882 1.90495 1.72539 1.33669 1.36086 1.22373 1.00105 0.95689 1.02495 1.21584 0.95452 0.97875 0.99935 1.20464 0.94813 0.95446 1.01550 0.91446 0.89805 0.93407 0.95166 0.94856 0.93003 0.89854 0.88701 0.91525 0.91154 0.90612 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 8.54 36.00 0.31 -1.65 15 2 C -0.10 -1.71 5.94 -101.57 -0.60 -2.31 15 3 C -0.16 -3.53 5.12 -103.10 -0.53 -4.06 15 4 C 0.06 1.48 4.38 -29.03 -0.13 1.36 15 5 C -0.50 -14.57 8.96 -34.44 -0.31 -14.88 15 6 H 0.05 1.52 7.74 -52.49 -0.41 1.12 15 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 8 N -0.89 -27.27 13.29 55.43 0.74 -26.54 15 9 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 15 10 H -0.27 -6.65 7.11 56.52 0.40 -6.24 15 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 15 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 13 C 0.39 8.16 6.89 -30.52 -0.21 7.95 15 14 O -0.45 -11.24 17.25 5.51 0.10 -11.14 15 15 C -0.17 -2.52 6.21 -27.21 -0.17 -2.69 15 16 C -0.11 -1.37 5.99 -26.45 -0.16 -1.53 15 17 C -0.09 -1.13 5.63 -28.23 -0.16 -1.29 15 18 H 0.07 1.17 7.57 -51.93 -0.39 0.77 15 19 H 0.08 1.65 7.68 -51.93 -0.40 1.25 15 20 H 0.05 0.65 7.94 -51.93 -0.41 0.24 15 21 H 0.03 0.91 7.74 -51.93 -0.40 0.51 15 22 H 0.03 0.90 6.25 -51.93 -0.32 0.58 15 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 29 H 0.07 0.80 8.12 -51.93 -0.42 0.38 15 LS Contribution 246.57 15.07 3.72 3.72 Total: -1.00 -32.45 246.57 -6.53 -38.99 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -4.01 Total: -4.61 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.05 Total: -17.53 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.54 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.10 Total: -11.14 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.45 -6.53 -38.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238207516.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.267 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds