Wall clock time and date at job start Mon Mar 30 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32747 * 118.40100 * 2 1 4 4 C 1.50701 * 119.69440 * 0.43110 * 3 2 1 5 5 C 1.50699 * 109.47053 * 94.41533 * 4 3 2 6 6 H 1.08001 * 120.00194 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99836 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00346 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00228 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47025 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47341 * 119.99342 * 9 7 5 12 12 H 1.48493 * 109.47199 * 239.99768 * 9 7 5 13 13 C 1.46668 * 120.60595 * 180.40601 * 3 2 1 14 14 O 1.21331 * 121.12494 * 168.55170 * 13 3 2 15 15 C 1.51485 * 117.74898 * 348.57682 * 13 3 2 16 16 C 1.53544 * 107.29110 * 41.92317 * 15 13 3 17 17 C 1.49983 * 118.40295 * 179.72678 * 2 1 3 18 18 H 1.09002 * 109.47273 * 65.01391 * 1 2 3 19 19 H 1.08998 * 109.47593 * 305.01823 * 1 2 3 20 20 H 1.08999 * 109.47572 * 185.01479 * 1 2 3 21 21 H 1.09001 * 109.46798 * 214.41384 * 4 3 2 22 22 H 1.09000 * 109.47033 * 334.41102 * 4 3 2 23 23 H 0.96991 * 120.00349 * 180.02562 * 8 7 5 24 24 H 1.08993 * 109.89073 * 161.36908 * 15 13 3 25 25 H 1.08994 * 109.88979 * 282.48064 * 15 13 3 26 26 H 1.09007 * 109.54538 * 57.90063 * 16 15 13 27 27 H 1.08997 * 109.54597 * 178.08313 * 16 15 13 28 28 H 1.08991 * 109.14298 * 278.51730 * 17 2 1 29 29 H 1.09005 * 109.13580 * 37.65064 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1384 1.1677 0.0000 4 6 1.3419 2.4470 0.0098 5 6 1.1787 2.9262 1.4293 6 1 1.6083 2.3607 2.2429 7 6 0.4800 4.0860 1.6893 8 7 -0.0436 4.7744 0.6985 9 14 0.2770 4.6796 3.4487 10 1 0.9541 3.7335 4.3716 11 1 0.8830 6.0280 3.5893 12 1 -1.1679 4.7489 3.7842 13 6 3.6039 1.2241 -0.0089 14 8 4.1902 2.2662 -0.2152 15 6 4.3609 -0.0627 0.2475 16 6 3.6456 -1.1759 -0.5313 17 6 2.2204 -1.3193 0.0063 18 1 -0.3634 0.4341 -0.9315 19 1 -0.3634 0.5897 0.8416 20 1 -0.3634 -1.0237 0.0898 21 1 1.8658 3.2056 -0.5717 22 1 0.3601 2.2672 -0.4282 23 1 -0.5348 5.5905 0.8814 24 1 5.3879 0.0348 -0.1041 25 1 4.3528 -0.2916 1.3131 26 1 3.6154 -0.9188 -1.5902 27 1 4.1818 -2.1157 -0.3994 28 1 2.2563 -1.7013 1.0264 29 1 1.6731 -2.0244 -0.6194 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238207516.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:31 Heat of formation + Delta-G solvation = -70.290201 kcal Electronic energy + Delta-G solvation = -12171.752926 eV Core-core repulsion = 10058.259813 eV Total energy + Delta-G solvation = -2113.493113 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.78895 -37.88801 -35.52792 -33.75027 -31.12412 -28.55637 -27.71002 -25.06848 -22.49967 -21.86355 -18.54619 -18.10583 -16.90201 -16.44485 -16.34725 -15.50436 -15.10881 -14.69749 -14.25854 -13.76987 -13.69194 -13.45320 -13.24338 -13.01488 -12.72721 -12.49523 -12.25950 -11.88370 -11.68352 -11.56916 -11.54573 -10.62138 -10.19004 -9.49504 -8.20805 -6.33088 0.29792 1.34244 1.36579 1.48905 2.07613 2.40680 3.09371 3.34235 3.86143 3.89209 4.15202 4.35582 4.49527 4.64373 4.76433 4.77750 4.90176 5.03675 5.07147 5.21413 5.23982 5.31467 5.37184 5.47422 5.67701 5.75092 6.07280 6.19201 6.76957 6.82709 7.34504 8.89738 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.042512 B = 0.011401 C = 0.010370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.485287 B = 2455.255848 C = 2699.391105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.046 4.046 3 C -0.228 4.228 4 C 0.067 3.933 5 C -0.520 4.520 6 H 0.051 0.949 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.381 3.619 14 O -0.518 6.518 15 C -0.157 4.157 16 C -0.105 4.105 17 C -0.088 4.088 18 H 0.060 0.940 19 H 0.053 0.947 20 H 0.096 0.904 21 H -0.026 1.026 22 H 0.017 0.983 23 H 0.264 0.736 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.062 0.938 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.507 -15.952 0.192 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.046 4.046 3 C -0.229 4.229 4 C 0.030 3.970 5 C -0.558 4.558 6 H 0.069 0.931 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.789 3.211 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.263 3.737 14 O -0.398 6.398 15 C -0.194 4.194 16 C -0.142 4.142 17 C -0.125 4.125 18 H 0.079 0.921 19 H 0.072 0.928 20 H 0.115 0.885 21 H -0.007 1.007 22 H 0.035 0.965 23 H 0.073 0.927 24 H 0.115 0.885 25 H 0.132 0.868 26 H 0.080 0.920 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.701 -15.285 0.047 15.727 hybrid contribution -0.331 1.374 0.586 1.530 sum 3.370 -13.911 0.632 14.327 Atomic orbital electron populations 1.20974 0.91726 1.03198 1.01848 1.22445 0.96747 0.94239 0.91197 1.22022 0.95184 0.97165 1.08559 1.17879 0.93325 0.89965 0.95851 1.21378 1.33317 1.08231 0.92864 0.93054 1.25985 0.95314 0.96664 1.01933 1.70104 1.37038 1.16956 1.33365 0.85398 0.78337 0.78117 0.79234 1.18653 1.20762 1.19436 1.23585 0.90039 0.90237 0.69793 1.90459 1.73289 1.36426 1.39593 1.22385 1.00180 0.92668 1.04177 1.21655 0.94925 0.98598 0.99049 1.20704 0.95186 0.92443 1.04119 0.92130 0.92782 0.88497 1.00740 0.96474 0.92715 0.88453 0.86786 0.91969 0.86457 0.87757 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.54 71.23 0.61 -3.34 15 2 C -0.05 -1.53 5.94 -17.85 -0.11 -1.64 15 3 C -0.23 -10.27 5.12 -18.84 -0.10 -10.37 15 4 C 0.07 3.84 4.38 29.10 0.13 3.96 15 5 C -0.52 -31.43 8.96 25.60 0.23 -31.20 15 6 H 0.05 3.03 7.74 -2.91 -0.02 3.00 15 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 15 8 N -0.93 -59.57 13.29 21.45 0.28 -59.29 15 9 Si 0.97 46.34 29.54 68.60 2.03 48.37 15 10 H -0.26 -12.03 7.11 99.48 0.71 -11.32 15 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 15 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 13 C 0.38 16.31 6.89 28.14 0.19 16.51 15 14 O -0.52 -27.37 17.25 -3.19 -0.05 -27.42 15 15 C -0.16 -4.23 6.21 30.28 0.19 -4.05 15 16 C -0.11 -2.05 5.99 30.78 0.18 -1.86 15 17 C -0.09 -1.82 5.63 29.62 0.17 -1.66 15 18 H 0.06 2.09 7.57 -2.39 -0.02 2.07 15 19 H 0.05 2.12 7.68 -2.39 -0.02 2.11 15 20 H 0.10 2.21 7.94 -2.39 -0.02 2.19 15 21 H -0.03 -1.72 7.74 -2.39 -0.02 -1.74 15 22 H 0.02 1.00 6.25 -2.39 -0.01 0.98 15 23 H 0.26 15.68 8.31 -92.72 -0.77 14.91 15 24 H 0.10 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 26 H 0.06 1.31 8.14 -2.38 -0.02 1.29 15 27 H 0.12 1.36 8.14 -2.39 -0.02 1.34 15 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 15 29 H 0.11 1.62 8.12 -2.38 -0.02 1.61 15 Total: -1.00 -77.92 246.57 5.34 -72.58 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: 1.12 Total: -0.96 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 1.96 Total: -33.28 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.28 Total: -59.29 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.05 Total: -27.42 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -77.92 5.34 -72.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238207516.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.289 kcal (2) G-P(sol) polarization free energy of solvation -77.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds