Wall clock time and date at job start Mon Mar 30 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48502 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47372 * 300.00180 * 3 2 1 6 6 H 1.48503 * 109.46851 * 60.00332 * 3 2 1 7 7 C 1.37879 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50926 * 119.99675 * 359.97438 * 7 2 1 10 10 H 1.09012 * 108.97248 * 60.18423 * 9 7 2 11 11 C 1.52858 * 109.24562 * 180.02562 * 9 7 2 12 12 C 1.52800 * 110.14853 * 177.95432 * 11 9 7 13 13 H 1.09191 * 109.33161 * 120.72788 * 12 11 9 14 14 C 1.52961 * 109.76961 * 240.52632 * 12 11 9 15 15 C 1.52822 * 110.00977 * 61.12912 * 14 12 11 16 16 C 1.52824 * 110.14095 * 58.05611 * 15 14 12 17 17 C 1.52955 * 110.07626 * 302.02175 * 16 15 14 18 18 H 1.09213 * 109.22215 * 178.82624 * 17 16 15 19 19 C 1.52807 * 109.75125 * 298.66417 * 17 16 15 20 20 C 1.52937 * 109.39221 * 59.32295 * 17 16 15 21 21 H 0.96997 * 119.99473 * 0.02562 * 1 2 3 22 22 H 1.09012 * 109.58397 * 57.13707 * 11 9 7 23 23 H 1.09263 * 109.20809 * 297.93756 * 11 9 7 24 24 H 1.09110 * 109.36848 * 300.87273 * 14 12 11 25 25 H 1.09088 * 109.37251 * 181.38221 * 14 12 11 26 26 H 1.08912 * 109.81776 * 296.96030 * 15 14 12 27 27 H 1.09356 * 109.12170 * 177.82462 * 15 14 12 28 28 H 1.09099 * 109.44697 * 62.23944 * 16 15 14 29 29 H 1.09116 * 109.44107 * 181.81783 * 16 15 14 30 30 H 1.09259 * 109.25474 * 239.31374 * 19 17 16 31 31 H 1.09009 * 109.73937 * 358.61458 * 19 17 16 32 32 H 1.09215 * 109.22275 * 58.67321 * 20 17 16 33 33 H 1.08786 * 109.97952 * 178.49170 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2498 -2.5011 -0.0005 10 1 0.6284 -2.5515 -0.8947 11 6 2.2476 -3.6591 -0.0005 12 6 1.5051 -4.9936 0.0507 13 1 1.7655 -5.5860 -0.8288 14 6 1.9064 -5.7608 1.3117 15 6 1.5273 -4.9576 2.5553 16 6 0.0259 -4.6721 2.5599 17 6 -0.3678 -3.9120 1.2923 18 1 -1.4453 -3.7338 1.2999 19 6 0.3659 -2.5725 1.2444 20 6 -0.0045 -4.7489 0.0648 21 1 -0.4849 0.8401 -0.0004 22 1 2.9083 -3.5721 0.8622 23 1 2.8485 -3.6159 -0.9121 24 1 2.9840 -5.9317 1.3038 25 1 1.3916 -6.7224 1.3293 26 1 2.0819 -4.0204 2.5728 27 1 1.7848 -5.5355 3.4472 28 1 -0.5228 -5.6141 2.6018 29 1 -0.2268 -4.0712 3.4349 30 1 -0.3659 -1.7617 1.2131 31 1 0.9814 -2.4577 2.1368 32 1 -0.5239 -5.7082 0.1172 33 1 -0.3049 -4.2285 -0.8420 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250518969.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:32 Heat of formation + Delta-G solvation = -37.616136 kcal Electronic energy + Delta-G solvation = -13066.831384 eV Core-core repulsion = 11090.588220 eV Total energy + Delta-G solvation = -1976.243164 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.41847 -33.69590 -31.73349 -31.24263 -28.94402 -24.93311 -24.76565 -22.26047 -20.24979 -19.93191 -16.25400 -16.23139 -15.67304 -14.53934 -13.99305 -13.51855 -13.35441 -12.46359 -12.17352 -11.92076 -11.84084 -11.20194 -10.96172 -10.79841 -10.50317 -10.42898 -10.36969 -9.97604 -9.90163 -9.72224 -9.50218 -8.96500 -8.64404 -8.41045 -8.13998 -5.90549 -3.96208 3.32756 3.40855 3.44882 4.49335 5.29616 5.36090 5.36758 5.41294 5.89276 5.94945 6.01712 6.07570 6.09970 6.14200 6.22137 6.45436 6.56677 6.61693 6.71121 6.73599 6.81876 6.85830 7.00280 7.02964 7.08844 7.37282 7.44647 7.70461 7.85815 8.15456 8.27794 8.57141 9.08465 9.67856 11.14677 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.054774 B = 0.011654 C = 0.011146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.067621 B = 2402.038998 C = 2511.569795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.050 3.950 10 H 0.026 0.974 11 C -0.103 4.103 12 C -0.087 4.087 13 H 0.051 0.949 14 C -0.106 4.106 15 C -0.118 4.118 16 C -0.107 4.107 17 C -0.089 4.089 18 H 0.050 0.950 19 C -0.103 4.103 20 C -0.100 4.100 21 H 0.257 0.743 22 H 0.050 0.950 23 H 0.039 0.961 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 -8.488 2.814 8.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.031 3.969 10 H 0.044 0.956 11 C -0.140 4.140 12 C -0.105 4.105 13 H 0.069 0.931 14 C -0.144 4.144 15 C -0.156 4.156 16 C -0.144 4.144 17 C -0.107 4.107 18 H 0.069 0.931 19 C -0.141 4.141 20 C -0.138 4.138 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.561 -8.364 2.816 8.843 hybrid contribution 0.431 0.940 0.028 1.034 sum 0.992 -7.424 2.844 8.012 Atomic orbital electron populations 1.69897 1.05795 1.25980 1.51361 1.24962 0.94812 0.98878 0.95409 0.86628 0.80207 0.84240 0.77470 1.19896 1.21157 1.21159 1.21385 0.92850 0.90953 1.49733 0.92928 1.18619 0.92628 0.91229 0.94381 0.95591 1.21663 0.98577 0.93963 0.99841 1.21109 0.95988 0.97317 0.96110 0.93053 1.21511 0.99666 0.97727 0.95466 1.21486 0.96921 1.00684 0.96461 1.21523 0.95682 0.98919 0.98297 1.21189 0.99007 0.97254 0.93278 0.93150 1.21621 0.99745 0.94000 0.98752 1.21414 0.95289 0.98037 0.99040 0.93271 0.93180 0.94189 0.92959 0.93367 0.90813 0.93712 0.93691 0.92880 0.89518 0.94507 0.94290 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 11.29 55.43 0.63 -25.12 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.23 8.56 -34.33 -0.29 -14.52 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.25 1.81 -91.81 -0.17 1.08 16 10 H 0.03 0.71 6.91 -51.92 -0.36 0.35 16 11 C -0.10 -2.19 4.63 -26.91 -0.12 -2.32 16 12 C -0.09 -1.57 3.13 -90.77 -0.28 -1.85 16 13 H 0.05 0.87 8.16 -51.82 -0.42 0.44 16 14 C -0.11 -1.69 5.24 -26.84 -0.14 -1.83 16 15 C -0.12 -1.95 5.41 -26.91 -0.15 -2.09 16 16 C -0.11 -1.81 5.24 -26.84 -0.14 -1.95 16 17 C -0.09 -1.74 3.13 -90.77 -0.28 -2.03 16 18 H 0.05 0.98 8.16 -51.81 -0.42 0.56 16 19 C -0.10 -2.45 4.45 -26.91 -0.12 -2.57 16 20 C -0.10 -1.87 4.89 -26.79 -0.13 -2.00 16 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 22 H 0.05 1.06 6.41 -51.92 -0.33 0.73 16 23 H 0.04 0.84 8.16 -51.78 -0.42 0.42 16 24 H 0.05 0.78 8.15 -51.87 -0.42 0.36 16 25 H 0.05 0.70 8.15 -51.88 -0.42 0.28 16 26 H 0.07 1.36 5.32 -51.98 -0.28 1.08 16 27 H 0.04 0.64 8.17 -51.73 -0.42 0.22 16 28 H 0.04 0.69 8.15 -51.87 -0.42 0.26 16 29 H 0.05 0.88 8.15 -51.86 -0.42 0.46 16 30 H 0.09 2.33 6.08 -51.78 -0.31 2.01 16 31 H 0.04 0.88 6.43 -51.92 -0.33 0.54 16 32 H 0.04 0.64 8.16 -51.81 -0.42 0.22 16 33 H 0.06 1.29 6.87 -52.05 -0.36 0.93 16 LS Contribution 241.43 15.07 3.64 3.64 Total: -1.00 -27.95 241.43 -8.00 -35.95 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.32 Total: -2.54 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: -1.93 Total: -28.49 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.63 Total: -25.12 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.95 -8.00 -35.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250518969.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.665 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds