Wall clock time and date at job start Mon Mar 30 2020 02:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48503 * 109.46905 * 239.99810 * 3 2 1 5 5 H 1.48497 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47229 * 120.00115 * 3 2 1 7 7 C 1.37876 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00400 * 180.02562 * 7 2 1 9 9 C 1.51937 * 119.99599 * 0.02562 * 7 2 1 10 10 H 1.09034 * 106.72731 * 298.65172 * 9 7 2 11 11 C 1.52133 * 108.22522 * 179.97438 * 9 7 2 12 12 C 1.52105 * 113.10661 * 193.33267 * 11 9 7 13 13 H 1.10245 * 108.30717 * 172.67755 * 12 11 9 14 14 C 1.52182 * 111.96426 * 291.97298 * 12 11 9 15 15 C 1.51992 * 112.90997 * 67.86371 * 14 12 11 16 16 C 1.51989 * 113.14404 * 47.08080 * 15 14 12 17 17 C 1.52170 * 112.96626 * 313.01939 * 16 15 14 18 18 H 1.10255 * 108.26165 * 172.63628 * 17 16 15 19 19 C 1.52836 * 110.19085 * 54.91427 * 17 16 15 20 20 C 1.52120 * 111.96858 * 291.95627 * 17 16 15 21 21 H 0.97002 * 119.99784 * 359.97438 * 1 2 3 22 22 H 1.09773 * 109.00976 * 71.87671 * 11 9 7 23 23 H 1.09717 * 109.08855 * 314.94489 * 11 9 7 24 24 H 1.09702 * 109.06823 * 306.27097 * 14 12 11 25 25 H 1.09757 * 109.00563 * 189.31809 * 14 12 11 26 26 H 1.08622 * 111.09606 * 281.29284 * 15 14 12 27 27 H 1.10821 * 107.68140 * 165.96046 * 15 14 12 28 28 H 1.09753 * 109.12337 * 74.44367 * 16 15 14 29 29 H 1.09723 * 109.17400 * 191.49302 * 16 15 14 30 30 H 1.08881 * 109.74848 * 57.69420 * 19 17 16 31 31 H 1.08901 * 109.71621 * 178.42271 * 19 17 16 32 32 H 1.09722 * 109.09138 * 189.40650 * 20 17 16 33 33 H 1.09756 * 109.03957 * 306.38788 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2447 -2.5098 0.0005 10 1 0.6539 -2.5310 0.9167 11 6 2.2582 -3.6444 0.0005 12 6 1.6405 -4.9965 -0.3221 13 1 2.4546 -5.7318 -0.4314 14 6 0.7103 -5.4756 0.7830 15 6 -0.5463 -4.6296 0.9067 16 6 -1.2188 -4.3597 -0.4293 17 6 -0.2416 -3.9105 -1.5058 18 1 -0.7818 -3.8661 -2.4660 19 6 0.8884 -4.9294 -1.6509 20 6 0.3306 -2.5313 -1.2154 21 1 -0.4850 0.8401 0.0004 22 1 2.7372 -3.6960 0.9869 23 1 3.0435 -3.4241 -0.7333 24 1 1.2506 -5.4610 1.7376 25 1 0.4250 -6.5165 0.5837 26 1 -0.3435 -3.7035 1.4369 27 1 -1.2659 -5.1864 1.5394 28 1 -1.7276 -5.2718 -0.7665 29 1 -1.9862 -3.5868 -0.2969 30 1 0.4735 -5.9076 -1.8886 31 1 1.5675 -4.6147 -2.4419 32 1 0.8912 -2.1835 -2.0921 33 1 -0.4959 -1.8274 -1.0544 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250518974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:35 Heat of formation + Delta-G solvation = -38.861093 kcal Electronic energy + Delta-G solvation = -13109.277030 eV Core-core repulsion = 11132.979880 eV Total energy + Delta-G solvation = -1976.297150 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.18123 -33.52344 -31.72428 -31.15119 -29.38657 -25.11544 -24.68173 -22.14316 -20.28304 -19.65568 -17.00638 -16.00507 -15.12491 -14.40818 -13.73429 -13.49190 -13.08505 -12.54175 -12.18457 -12.03084 -11.90468 -11.42163 -10.97171 -10.82288 -10.57042 -10.50693 -10.02863 -9.87769 -9.77112 -9.73346 -9.54374 -8.90399 -8.64504 -8.30321 -8.07737 -5.88130 -3.93970 3.35831 3.40365 3.43156 4.49991 5.33689 5.37234 5.38459 5.42181 5.90537 5.95652 6.05114 6.09825 6.11463 6.23682 6.28429 6.48529 6.53323 6.63538 6.70320 6.81654 6.87342 6.99620 7.00212 7.08620 7.13222 7.32563 7.40550 7.72411 7.87634 8.21268 8.30689 8.55474 9.09251 9.69391 11.16299 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.052951 B = 0.012219 C = 0.011542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.662223 B = 2290.971985 C = 2425.272680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.514 4.514 8 H 0.051 0.949 9 C 0.044 3.956 10 H 0.035 0.965 11 C -0.095 4.095 12 C -0.081 4.081 13 H 0.044 0.956 14 C -0.098 4.098 15 C -0.113 4.113 16 C -0.096 4.096 17 C -0.085 4.085 18 H 0.042 0.958 19 C -0.103 4.103 20 C -0.094 4.094 21 H 0.258 0.742 22 H 0.038 0.962 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -8.236 -0.784 8.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.553 4.553 8 H 0.069 0.931 9 C 0.026 3.974 10 H 0.053 0.947 11 C -0.132 4.132 12 C -0.100 4.100 13 H 0.063 0.937 14 C -0.136 4.136 15 C -0.150 4.150 16 C -0.134 4.134 17 C -0.104 4.104 18 H 0.061 0.939 19 C -0.141 4.141 20 C -0.132 4.132 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.748 -8.106 -0.777 8.177 hybrid contribution 0.503 0.967 -0.052 1.091 sum -0.244 -7.139 -0.829 7.191 Atomic orbital electron populations 1.69877 1.05714 1.26103 1.51433 1.24944 0.94844 0.98781 0.95486 0.86746 0.79649 0.83628 0.78470 1.20470 1.21417 1.20452 1.21638 0.92670 0.91010 1.49980 0.93114 1.18579 0.92689 0.91231 0.94919 0.94702 1.21375 0.98859 0.93594 0.99411 1.20851 0.96433 0.97837 0.94834 0.93720 1.21173 0.96270 0.97782 0.98369 1.21257 0.95812 1.00888 0.97056 1.21126 0.97668 0.99411 0.95168 1.20977 0.95156 0.97624 0.96594 0.93939 1.21414 0.97848 0.97878 0.96936 1.21333 1.01101 0.92344 0.98440 0.93217 0.94299 0.93839 0.93045 0.93872 0.90332 0.94686 0.94348 0.92540 0.93723 0.92647 0.94949 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 11.20 55.43 0.62 -24.97 16 2 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.32 8.36 -33.83 -0.28 -14.61 16 8 H 0.05 1.41 7.70 -52.49 -0.40 1.00 16 9 C 0.04 1.09 1.65 -92.04 -0.15 0.94 16 10 H 0.04 0.93 5.55 -51.91 -0.29 0.65 16 11 C -0.09 -2.03 4.55 -27.63 -0.13 -2.16 16 12 C -0.08 -1.47 2.79 -91.57 -0.26 -1.73 16 13 H 0.04 0.74 8.25 -51.22 -0.42 0.31 16 14 C -0.10 -1.66 5.33 -27.66 -0.15 -1.81 16 15 C -0.11 -2.03 5.04 -27.76 -0.14 -2.17 16 16 C -0.10 -1.75 5.32 -27.67 -0.15 -1.90 16 17 C -0.08 -1.67 2.79 -91.58 -0.26 -1.92 16 18 H 0.04 0.79 8.25 -51.21 -0.42 0.37 16 19 C -0.10 -1.84 5.27 -26.90 -0.14 -1.98 16 20 C -0.09 -2.25 4.15 -27.62 -0.11 -2.37 16 21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.04 0.82 8.21 -51.49 -0.42 0.39 16 23 H 0.04 0.94 8.04 -51.52 -0.41 0.53 16 24 H 0.05 0.83 8.20 -51.53 -0.42 0.41 16 25 H 0.04 0.65 8.21 -51.50 -0.42 0.22 16 26 H 0.08 1.61 5.64 -52.14 -0.29 1.32 16 27 H 0.03 0.55 8.29 -50.88 -0.42 0.13 16 28 H 0.04 0.61 8.20 -51.50 -0.42 0.19 16 29 H 0.06 1.06 8.20 -51.52 -0.42 0.64 16 30 H 0.04 0.71 8.13 -52.00 -0.42 0.28 16 31 H 0.05 0.99 8.13 -51.98 -0.42 0.57 16 32 H 0.03 0.81 8.06 -51.52 -0.42 0.39 16 33 H 0.09 2.32 6.24 -51.50 -0.32 1.99 16 LS Contribution 244.19 15.07 3.68 3.68 Total: -1.00 -27.81 244.19 -8.07 -35.88 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -5.50 Total: -3.08 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -1.86 Total: -28.11 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.62 Total: -24.97 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.81 -8.07 -35.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250518974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.983 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds