Wall clock time and date at job start Mon Mar 30 2020 02:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48503 * 109.46905 * 239.99810 * 3 2 1 5 5 H 1.48497 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47229 * 120.00115 * 3 2 1 7 7 C 1.37876 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00400 * 180.02562 * 7 2 1 9 9 C 1.51937 * 119.99599 * 0.02562 * 7 2 1 10 10 H 1.09034 * 106.72731 * 298.65172 * 9 7 2 11 11 C 1.52133 * 108.22522 * 179.97438 * 9 7 2 12 12 C 1.52105 * 113.10661 * 193.33267 * 11 9 7 13 13 H 1.10245 * 108.30717 * 172.67755 * 12 11 9 14 14 C 1.52182 * 111.96426 * 291.97298 * 12 11 9 15 15 C 1.51992 * 112.90997 * 67.86371 * 14 12 11 16 16 C 1.51989 * 113.14404 * 47.08080 * 15 14 12 17 17 C 1.52170 * 112.96626 * 313.01939 * 16 15 14 18 18 H 1.10255 * 108.26165 * 172.63628 * 17 16 15 19 19 C 1.52836 * 110.19085 * 54.91427 * 17 16 15 20 20 C 1.52120 * 111.96858 * 291.95627 * 17 16 15 21 21 H 0.97002 * 119.99784 * 359.97438 * 1 2 3 22 22 H 1.09773 * 109.00976 * 71.87671 * 11 9 7 23 23 H 1.09717 * 109.08855 * 314.94489 * 11 9 7 24 24 H 1.09702 * 109.06823 * 306.27097 * 14 12 11 25 25 H 1.09757 * 109.00563 * 189.31809 * 14 12 11 26 26 H 1.08622 * 111.09606 * 281.29284 * 15 14 12 27 27 H 1.10821 * 107.68140 * 165.96046 * 15 14 12 28 28 H 1.09753 * 109.12337 * 74.44367 * 16 15 14 29 29 H 1.09723 * 109.17400 * 191.49302 * 16 15 14 30 30 H 1.08881 * 109.74848 * 57.69420 * 19 17 16 31 31 H 1.08901 * 109.71621 * 178.42271 * 19 17 16 32 32 H 1.09722 * 109.09138 * 189.40650 * 20 17 16 33 33 H 1.09756 * 109.03957 * 306.38788 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2447 -2.5098 0.0005 10 1 0.6539 -2.5310 0.9167 11 6 2.2582 -3.6444 0.0005 12 6 1.6405 -4.9965 -0.3221 13 1 2.4546 -5.7318 -0.4314 14 6 0.7103 -5.4756 0.7830 15 6 -0.5463 -4.6296 0.9067 16 6 -1.2188 -4.3597 -0.4293 17 6 -0.2416 -3.9105 -1.5058 18 1 -0.7818 -3.8661 -2.4660 19 6 0.8884 -4.9294 -1.6509 20 6 0.3306 -2.5313 -1.2154 21 1 -0.4850 0.8401 0.0004 22 1 2.7372 -3.6960 0.9869 23 1 3.0435 -3.4241 -0.7333 24 1 1.2506 -5.4610 1.7376 25 1 0.4250 -6.5165 0.5837 26 1 -0.3435 -3.7035 1.4369 27 1 -1.2659 -5.1864 1.5394 28 1 -1.7276 -5.2718 -0.7665 29 1 -1.9862 -3.5868 -0.2969 30 1 0.4735 -5.9076 -1.8886 31 1 1.5675 -4.6147 -2.4419 32 1 0.8912 -2.1835 -2.0921 33 1 -0.4959 -1.8274 -1.0544 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250518974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:34 Heat of formation + Delta-G solvation = -53.047741 kcal Electronic energy + Delta-G solvation = -13109.892209 eV Core-core repulsion = 11132.979880 eV Total energy + Delta-G solvation = -1976.912329 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75039 -35.49553 -33.30401 -32.85641 -31.10118 -26.74632 -26.71290 -23.68075 -21.84648 -21.41550 -18.75449 -17.93391 -16.83081 -16.31403 -15.29625 -15.05578 -14.60029 -14.24229 -14.02583 -13.74150 -13.46236 -12.94243 -12.82817 -12.61975 -12.42035 -12.15759 -11.86180 -11.54772 -11.47906 -11.36682 -11.17912 -10.68747 -10.31494 -10.21541 -10.03332 -8.02687 -6.16903 1.38821 1.39931 1.47442 2.43573 3.21782 3.90336 3.94055 3.98918 4.47203 4.52462 4.55886 4.61474 4.67645 4.75148 4.82766 4.94449 4.98523 5.16483 5.22162 5.26213 5.28227 5.37882 5.43245 5.49528 5.60231 5.61826 5.69234 5.74823 5.88290 6.21491 6.33067 6.44911 6.96760 7.49692 8.98999 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.052951 B = 0.012219 C = 0.011542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.662223 B = 2290.971985 C = 2425.272680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.044 0.956 9 C 0.045 3.955 10 H 0.010 0.990 11 C -0.091 4.091 12 C -0.082 4.082 13 H 0.073 0.927 14 C -0.098 4.098 15 C -0.116 4.116 16 C -0.095 4.095 17 C -0.087 4.087 18 H 0.052 0.948 19 C -0.099 4.099 20 C -0.082 4.082 21 H 0.258 0.742 22 H 0.035 0.965 23 H 0.033 0.967 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.006 0.994 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -10.128 -1.041 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.062 0.938 9 C 0.027 3.973 10 H 0.028 0.972 11 C -0.129 4.129 12 C -0.100 4.100 13 H 0.091 0.909 14 C -0.135 4.135 15 C -0.153 4.153 16 C -0.133 4.133 17 C -0.105 4.105 18 H 0.070 0.930 19 C -0.136 4.136 20 C -0.120 4.120 21 H 0.067 0.933 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.510 -10.004 -1.033 10.070 hybrid contribution 0.422 1.590 0.043 1.646 sum -0.087 -8.414 -0.989 8.472 Atomic orbital electron populations 1.70033 1.06906 1.26705 1.51862 1.25693 0.95703 1.02047 0.95231 0.85783 0.78534 0.79707 0.78662 1.19944 1.20900 1.19797 1.22084 0.92722 0.92990 1.50150 0.93767 1.18542 0.93031 0.91593 0.94110 0.97155 1.21288 0.97753 0.94781 0.99030 1.20861 0.97618 0.95966 0.95546 0.90899 1.21172 0.95182 0.99090 0.98055 1.21236 0.97383 0.99744 0.96936 1.21109 0.96945 1.00313 0.94908 1.20936 0.96400 0.95507 0.97656 0.92960 1.21409 0.96862 0.98729 0.96631 1.21122 0.99333 0.94746 0.96815 0.93329 0.94600 0.94820 0.92726 0.90448 0.94220 0.92185 0.90838 0.94448 0.90202 0.93067 0.97508 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.33 11.20 21.45 0.24 -54.09 16 2 C 0.01 0.65 5.28 84.65 0.45 1.09 16 3 Si 0.95 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -31.08 8.36 26.00 0.22 -30.87 16 8 H 0.04 2.52 7.70 -2.91 -0.02 2.49 16 9 C 0.05 2.32 1.65 -11.72 -0.02 2.30 16 10 H 0.01 0.59 5.55 -2.37 -0.01 0.57 16 11 C -0.09 -3.87 4.55 30.01 0.14 -3.73 16 12 C -0.08 -2.72 2.79 -11.41 -0.03 -2.75 16 13 H 0.07 2.08 8.25 -1.72 -0.01 2.07 16 14 C -0.10 -2.95 5.33 29.99 0.16 -2.79 16 15 C -0.12 -3.95 5.04 29.93 0.15 -3.80 16 16 C -0.10 -3.29 5.32 29.99 0.16 -3.13 16 17 C -0.09 -3.28 2.79 -11.41 -0.03 -3.32 16 18 H 0.05 1.87 8.25 -1.71 -0.01 1.85 16 19 C -0.10 -3.21 5.27 30.49 0.16 -3.05 16 20 C -0.08 -4.03 4.15 30.02 0.12 -3.91 16 21 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 22 H 0.04 1.50 8.21 -1.97 -0.02 1.48 16 23 H 0.03 1.46 8.04 -2.00 -0.02 1.44 16 24 H 0.05 1.62 8.20 -2.01 -0.02 1.60 16 25 H 0.08 1.88 8.21 -1.98 -0.02 1.86 16 26 H 0.04 1.65 5.64 -2.59 -0.01 1.64 16 27 H 0.06 1.73 8.29 -1.40 -0.01 1.72 16 28 H 0.07 2.06 8.20 -1.99 -0.02 2.04 16 29 H 0.04 1.40 8.20 -2.00 -0.02 1.38 16 30 H 0.08 2.10 8.13 -2.45 -0.02 2.08 16 31 H 0.05 1.70 8.13 -2.44 -0.02 1.68 16 32 H 0.01 0.32 8.06 -2.00 -0.02 0.30 16 33 H 0.05 2.87 6.24 -1.98 -0.01 2.86 16 Total: -1.00 -61.27 244.19 4.83 -56.43 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.09 Total: 4.45 kcal Atomic # 6 Polarization: -55.42 SS G_CDS: 1.47 Total: -53.95 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.24 Total: -54.09 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -61.27 4.83 -56.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250518974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.386 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds