Wall clock time and date at job start Mon Mar 30 2020 02:45:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86794 * 120.00161 * 2 1
4 4 H 1.48502 * 109.47454 * 270.00659 * 3 2 1
5 5 H 1.48501 * 109.47039 * 30.00290 * 3 2 1
6 6 H 1.48499 * 109.47271 * 150.00108 * 3 2 1
7 7 C 1.37876 * 119.99882 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00469 * 359.97438 * 7 2 1
9 9 C 1.50705 * 119.99880 * 180.02562 * 7 2 1
10 10 H 1.08988 * 110.02201 * 58.59543 * 9 7 2
11 11 C 1.54619 * 110.03038 * 297.14858 * 9 7 2
12 12 C 1.53996 * 103.46256 * 263.77204 * 11 9 7
13 13 H 1.08991 * 108.59415 * 76.53655 * 12 11 9
14 14 C 1.50967 * 112.60442 * 197.64483 * 12 11 9
15 15 C 1.52836 * 111.50581 * 64.77856 * 14 12 11
16 16 C 1.53296 * 108.23630 * 59.02577 * 15 14 12
17 17 C 1.52624 * 108.53405 * 296.32266 * 16 15 14
18 18 C 1.53052 * 110.87914 * 62.21009 * 17 16 15
19 19 H 1.09004 * 112.18378 * 71.86338 * 18 17 16
20 20 C 1.54014 * 110.03505 * 179.97438 * 9 7 2
21 21 H 0.96995 * 120.00327 * 359.97438 * 1 2 3
22 22 H 1.09009 * 110.62218 * 145.27881 * 11 9 7
23 23 H 1.09002 * 110.62721 * 22.27151 * 11 9 7
24 24 H 1.09002 * 109.06983 * 304.25590 * 14 12 11
25 25 H 1.09002 * 109.01812 * 185.26372 * 14 12 11
26 26 H 1.08994 * 109.71339 * 299.33832 * 15 14 12
27 27 H 1.08997 * 109.74646 * 178.72944 * 15 14 12
28 28 H 1.08991 * 109.62714 * 56.04125 * 16 15 14
29 29 H 1.09003 * 109.62178 * 176.61085 * 16 15 14
30 30 H 1.08994 * 109.19684 * 182.57016 * 17 16 15
31 31 H 1.09002 * 109.19707 * 301.85235 * 17 16 15
32 32 H 1.09003 * 110.08973 * 1.81500 * 20 9 7
33 33 H 1.08990 * 110.13915 * 240.26016 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 0.0000
10 1 3.8843 -0.6611 0.8746
11 6 4.0416 -0.5303 -1.2919
12 6 4.3174 -1.7262 -2.2222
13 1 3.3670 -2.0876 -2.6147
14 6 5.2271 -1.3686 -3.3727
15 6 6.6232 -0.9835 -2.8843
16 6 7.2050 -2.1714 -2.1095
17 6 6.3402 -2.4165 -0.8760
18 6 4.9103 -2.7865 -1.2772
19 1 4.8481 -3.7886 -1.7016
20 6 4.0392 -2.6410 -0.0001
21 1 -0.4850 0.8400 0.0004
22 1 4.9609 0.0201 -1.0914
23 1 3.2864 0.1261 -1.7241
24 1 4.7969 -0.5295 -3.9194
25 1 5.3075 -2.2256 -4.0415
26 1 6.5570 -0.1146 -2.2298
27 1 7.2612 -0.7532 -3.7375
28 1 7.2003 -3.0589 -2.7422
29 1 8.2255 -1.9432 -1.8017
30 1 6.7706 -3.2302 -0.2925
31 1 6.3191 -1.5123 -0.2677
32 1 3.2062 -3.3433 -0.0330
33 1 4.6443 -2.8198 0.8886
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000250894379.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:16
Heat of formation + Delta-G solvation = -34.970679 kcal
Electronic energy + Delta-G solvation = -12952.768504 eV
Core-core repulsion = 10976.640055 eV
Total energy + Delta-G solvation = -1976.128449 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 194.137 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.35675 -34.48684 -32.04603 -31.07631 -28.63181 -26.23284 -24.18640 -21.93459
-21.25506 -18.86259 -18.01518 -16.45514 -15.34728 -14.63348 -13.98245 -13.72071
-13.41720 -13.24867 -12.70824 -12.21796 -11.53745 -11.48817 -11.21825 -11.12769
-10.86943 -10.57479 -10.34300 -10.09084 -9.63463 -9.56323 -9.53401 -9.32664
-9.14758 -8.80316 -8.47197 -6.00475 -3.97526 3.32335 3.41855 3.45240
4.48151 5.07527 5.09173 5.17021 5.33107 5.58436 5.64438 5.79775
5.86602 5.86961 5.94513 6.01191 6.30228 6.33865 6.38749 6.42756
6.45530 6.49300 6.60901 6.67307 6.79848 6.88539 7.04666 7.10193
7.20345 7.35399 7.59429 7.89998 8.61819 9.04516 9.63344 11.12898
Molecular weight = 194.14amu
Principal moments of inertia in cm(-1)
A = 0.048456 B = 0.012970 C = 0.011826
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 577.699638 B = 2158.252213 C = 2367.166917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.066 3.934
3 Si 0.881 3.119
4 H -0.278 1.278
5 H -0.296 1.296
6 H -0.264 1.264
7 C -0.504 4.504
8 H 0.072 0.928
9 C 0.009 3.991
10 H 0.024 0.976
11 C -0.123 4.123
12 C -0.079 4.079
13 H 0.071 0.929
14 C -0.108 4.108
15 C -0.119 4.119
16 C -0.117 4.117
17 C -0.111 4.111
18 C -0.085 4.085
19 H 0.065 0.935
20 C -0.105 4.105
21 H 0.262 0.738
22 H 0.039 0.961
23 H 0.059 0.941
24 H 0.055 0.945
25 H 0.052 0.948
26 H 0.063 0.937
27 H 0.053 0.947
28 H 0.057 0.943
29 H 0.052 0.948
30 H 0.051 0.949
31 H 0.063 0.937
32 H 0.058 0.942
33 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.588 -2.515 -4.477 13.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.134 4.134
3 Si 0.709 3.291
4 H -0.204 1.204
5 H -0.223 1.223
6 H -0.189 1.189
7 C -0.542 4.542
8 H 0.090 0.910
9 C -0.010 4.010
10 H 0.042 0.958
11 C -0.161 4.161
12 C -0.098 4.098
13 H 0.089 0.911
14 C -0.146 4.146
15 C -0.157 4.157
16 C -0.154 4.154
17 C -0.148 4.148
18 C -0.103 4.103
19 H 0.083 0.917
20 C -0.142 4.142
21 H 0.071 0.929
22 H 0.058 0.942
23 H 0.078 0.922
24 H 0.074 0.926
25 H 0.071 0.929
26 H 0.082 0.918
27 H 0.071 0.929
28 H 0.076 0.924
29 H 0.071 0.929
30 H 0.070 0.930
31 H 0.082 0.918
32 H 0.077 0.923
33 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 12.415 -2.401 -4.460 13.408
hybrid contribution 0.258 0.992 -0.036 1.026
sum 12.672 -1.409 -4.496 13.520
Atomic orbital electron populations
1.69911 1.06286 1.26747 1.51493 1.25037 0.94649 0.99052 0.94698
0.86904 0.80307 0.83701 0.78141 1.20440 1.22328 1.18876 1.21188
0.88849 0.94174 1.49942 0.91041 1.19809 0.96547 0.91807 0.92820
0.95808 1.22730 0.98379 0.96740 0.98206 1.21170 0.97866 0.96391
0.94346 0.91076 1.21025 0.95129 1.00447 0.97954 1.21575 0.96407
0.98358 0.99325 1.21511 0.98113 0.98237 0.97551 1.21549 0.95138
1.01183 0.96954 1.21932 0.94130 0.97561 0.96697 0.91690 1.22463
0.97606 0.99237 0.94916 0.92861 0.94241 0.92234 0.92627 0.92878
0.91833 0.92864 0.92436 0.92878 0.93022 0.91830 0.92298 0.93852
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16
2 C 0.07 1.94 5.36 -17.82 -0.10 1.85 16
3 Si 0.88 22.28 24.71 -169.99 -4.20 18.08 16
4 H -0.28 -6.85 6.91 56.52 0.39 -6.46 16
5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16
6 H -0.26 -6.43 6.50 56.52 0.37 -6.06 16
7 C -0.50 -14.32 9.08 -34.44 -0.31 -14.63 16
8 H 0.07 2.20 7.57 -52.49 -0.40 1.80 16
9 C 0.01 0.21 2.29 -90.39 -0.21 0.01 16
10 H 0.02 0.59 7.12 -51.94 -0.37 0.22 16
11 C -0.12 -2.67 3.80 -25.36 -0.10 -2.76 16
12 C -0.08 -1.48 2.71 -90.65 -0.25 -1.73 16
13 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
14 C -0.11 -1.68 5.38 -27.84 -0.15 -1.83 16
15 C -0.12 -1.67 5.79 -26.66 -0.15 -1.82 16
16 C -0.12 -1.54 5.93 -26.77 -0.16 -1.70 16
17 C -0.11 -1.68 4.62 -26.90 -0.12 -1.81 16
18 C -0.08 -1.47 3.47 -88.92 -0.31 -1.78 16
19 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
20 C -0.10 -2.12 5.79 -25.00 -0.14 -2.27 16
21 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
22 H 0.04 0.80 6.04 -51.92 -0.31 0.48 16
23 H 0.06 1.42 5.14 -51.93 -0.27 1.15 16
24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
26 H 0.06 0.95 6.75 -51.93 -0.35 0.60 16
27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16
30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
31 H 0.06 1.04 7.05 -51.93 -0.37 0.68 16
32 H 0.06 1.25 7.38 -51.93 -0.38 0.87 16
33 H 0.04 0.81 7.76 -51.93 -0.40 0.40 16
LS Contribution 241.66 15.07 3.64 3.64
Total: -1.00 -29.62 241.66 -7.19 -36.81
By element:
Atomic # 1 Polarization: 2.75 SS G_CDS: -5.41 Total: -2.67 kcal
Atomic # 6 Polarization: -26.48 SS G_CDS: -2.00 Total: -28.48 kcal
Atomic # 7 Polarization: -28.17 SS G_CDS: 0.77 Total: -27.40 kcal
Atomic # 14 Polarization: 22.28 SS G_CDS: -4.20 Total: 18.08 kcal
Total LS contribution 3.64 Total: 3.64 kcal
Total: -29.62 -7.19 -36.81 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000250894379.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.844 kcal
(2) G-P(sol) polarization free energy of solvation -29.620 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.776 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.971 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds