Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00161 * 2 1 4 4 H 1.48502 * 109.47454 * 270.00659 * 3 2 1 5 5 H 1.48501 * 109.47039 * 30.00290 * 3 2 1 6 6 H 1.48499 * 109.47271 * 150.00108 * 3 2 1 7 7 C 1.37876 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00469 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99880 * 180.02562 * 7 2 1 10 10 H 1.08988 * 110.02201 * 58.59543 * 9 7 2 11 11 C 1.54619 * 110.03038 * 297.14858 * 9 7 2 12 12 C 1.53996 * 103.46256 * 263.77204 * 11 9 7 13 13 H 1.08991 * 108.59415 * 76.53655 * 12 11 9 14 14 C 1.50967 * 112.60442 * 197.64483 * 12 11 9 15 15 C 1.52836 * 111.50581 * 64.77856 * 14 12 11 16 16 C 1.53296 * 108.23630 * 59.02577 * 15 14 12 17 17 C 1.52624 * 108.53405 * 296.32266 * 16 15 14 18 18 C 1.53052 * 110.87914 * 62.21009 * 17 16 15 19 19 H 1.09004 * 112.18378 * 71.86338 * 18 17 16 20 20 C 1.54014 * 110.03505 * 179.97438 * 9 7 2 21 21 H 0.96995 * 120.00327 * 359.97438 * 1 2 3 22 22 H 1.09009 * 110.62218 * 145.27881 * 11 9 7 23 23 H 1.09002 * 110.62721 * 22.27151 * 11 9 7 24 24 H 1.09002 * 109.06983 * 304.25590 * 14 12 11 25 25 H 1.09002 * 109.01812 * 185.26372 * 14 12 11 26 26 H 1.08994 * 109.71339 * 299.33832 * 15 14 12 27 27 H 1.08997 * 109.74646 * 178.72944 * 15 14 12 28 28 H 1.08991 * 109.62714 * 56.04125 * 16 15 14 29 29 H 1.09003 * 109.62178 * 176.61085 * 16 15 14 30 30 H 1.08994 * 109.19684 * 182.57016 * 17 16 15 31 31 H 1.09002 * 109.19707 * 301.85235 * 17 16 15 32 32 H 1.09003 * 110.08973 * 1.81500 * 20 9 7 33 33 H 1.08990 * 110.13915 * 240.26016 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8843 -0.6611 0.8746 11 6 4.0416 -0.5303 -1.2919 12 6 4.3174 -1.7262 -2.2222 13 1 3.3670 -2.0876 -2.6147 14 6 5.2271 -1.3686 -3.3727 15 6 6.6232 -0.9835 -2.8843 16 6 7.2050 -2.1714 -2.1095 17 6 6.3402 -2.4165 -0.8760 18 6 4.9103 -2.7865 -1.2772 19 1 4.8481 -3.7886 -1.7016 20 6 4.0392 -2.6410 -0.0001 21 1 -0.4850 0.8400 0.0004 22 1 4.9609 0.0201 -1.0914 23 1 3.2864 0.1261 -1.7241 24 1 4.7969 -0.5295 -3.9194 25 1 5.3075 -2.2256 -4.0415 26 1 6.5570 -0.1146 -2.2298 27 1 7.2612 -0.7532 -3.7375 28 1 7.2003 -3.0589 -2.7422 29 1 8.2255 -1.9432 -1.8017 30 1 6.7706 -3.2302 -0.2925 31 1 6.3191 -1.5123 -0.2677 32 1 3.2062 -3.3433 -0.0330 33 1 4.6443 -2.8198 0.8886 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250894379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = -52.309552 kcal Electronic energy + Delta-G solvation = -12953.520374 eV Core-core repulsion = 10976.640055 eV Total energy + Delta-G solvation = -1976.880319 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.80605 -36.08676 -34.07646 -32.40076 -30.32498 -27.74969 -26.14299 -23.22567 -22.57641 -20.66663 -19.47456 -18.51846 -16.94944 -16.29153 -15.55962 -14.99057 -14.92052 -14.72811 -14.64599 -13.78302 -13.23099 -12.93890 -12.73257 -12.61114 -12.21730 -12.18373 -11.95213 -11.75200 -11.51269 -11.21294 -11.08915 -10.76446 -10.70770 -10.67993 -10.59016 -8.29338 -6.31017 1.30155 1.33318 1.44712 2.33492 3.05046 3.79196 3.84079 3.92653 4.29886 4.36690 4.44348 4.53789 4.64754 4.66929 4.81287 4.86495 4.92360 4.98107 5.05095 5.06335 5.21844 5.25096 5.28862 5.38486 5.46192 5.53682 5.59543 5.67145 5.70473 5.77367 5.85580 6.33529 6.76309 7.33505 8.87700 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.048456 B = 0.012970 C = 0.011826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.699638 B = 2158.252213 C = 2367.166917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.007 3.993 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.245 1.245 7 C -0.508 4.508 8 H 0.028 0.972 9 C 0.003 3.997 10 H 0.018 0.982 11 C -0.120 4.120 12 C -0.077 4.077 13 H 0.041 0.959 14 C -0.106 4.106 15 C -0.118 4.118 16 C -0.112 4.112 17 C -0.109 4.109 18 C -0.076 4.076 19 H 0.081 0.919 20 C -0.105 4.105 21 H 0.264 0.736 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.931 -2.190 -5.282 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.168 1.168 7 C -0.546 4.546 8 H 0.046 0.954 9 C -0.016 4.016 10 H 0.036 0.964 11 C -0.157 4.157 12 C -0.096 4.096 13 H 0.059 0.941 14 C -0.143 4.143 15 C -0.156 4.156 16 C -0.149 4.149 17 C -0.146 4.146 18 C -0.094 4.094 19 H 0.099 0.901 20 C -0.143 4.143 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.778 -2.092 -5.268 16.765 hybrid contribution -0.878 0.792 0.246 1.208 sum 14.899 -1.300 -5.021 15.776 Atomic orbital electron populations 1.70065 1.08229 1.27846 1.53418 1.25921 0.95419 1.03115 0.94444 0.85865 0.79550 0.78708 0.78917 1.19122 1.22267 1.16848 1.21494 0.91586 0.92512 1.49055 0.95398 1.19824 0.93348 0.94546 0.93852 0.96354 1.22604 0.98246 0.97534 0.97329 1.21154 0.97732 0.95415 0.95284 0.94088 1.21003 0.95559 1.01134 0.96637 1.21593 0.95453 0.98310 1.00202 1.21502 0.98575 0.98377 0.96458 1.21526 0.93675 1.01254 0.98183 1.21910 0.95111 0.97998 0.94373 0.90095 1.22426 0.97740 0.96304 0.97797 0.92743 0.92125 0.94772 0.93003 0.91057 0.92866 0.90364 0.91146 0.90712 0.91215 0.93083 0.94605 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.68 13.96 21.45 0.30 -61.38 16 2 C 0.01 0.42 5.36 84.66 0.45 0.88 16 3 Si 0.94 46.32 24.71 68.60 1.70 48.02 16 4 H -0.27 -12.44 6.91 99.48 0.69 -11.75 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.24 -11.16 6.50 99.48 0.65 -10.51 16 7 C -0.51 -30.07 9.08 25.60 0.23 -29.84 16 8 H 0.03 1.83 7.57 -2.91 -0.02 1.81 16 9 C 0.00 0.15 2.29 -10.64 -0.02 0.12 16 10 H 0.02 0.89 7.12 -2.39 -0.02 0.87 16 11 C -0.12 -5.06 3.80 31.48 0.12 -4.94 16 12 C -0.08 -2.79 2.71 -10.81 -0.03 -2.82 16 13 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 14 C -0.11 -2.98 5.38 29.88 0.16 -2.82 16 15 C -0.12 -2.78 5.79 30.64 0.18 -2.60 16 16 C -0.11 -2.39 5.93 30.57 0.18 -2.21 16 17 C -0.11 -2.88 4.62 30.49 0.14 -2.74 16 18 C -0.08 -2.46 3.47 -9.69 -0.03 -2.49 16 19 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 20 C -0.11 -4.22 5.79 31.72 0.18 -4.04 16 21 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 22 H 0.06 2.30 6.04 -2.38 -0.01 2.29 16 23 H 0.03 1.60 5.14 -2.39 -0.01 1.59 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.37 6.75 -2.39 -0.02 1.35 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.49 7.05 -2.39 -0.02 1.47 16 32 H 0.04 1.56 7.38 -2.39 -0.02 1.55 16 33 H 0.06 2.22 7.76 -2.39 -0.02 2.20 16 Total: -1.00 -66.00 241.66 4.54 -61.46 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.98 Total: 5.40 kcal Atomic # 6 Polarization: -55.06 SS G_CDS: 1.56 Total: -53.50 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.30 Total: -61.38 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.70 Total: 48.02 kcal Total: -66.00 4.54 -61.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250894379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.153 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds