Wall clock time and date at job start Mon Mar 30 2020 02:45:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86794 * 120.00161 * 2 1
4 4 H 1.48502 * 109.47454 * 270.00659 * 3 2 1
5 5 H 1.48501 * 109.47039 * 30.00290 * 3 2 1
6 6 H 1.48499 * 109.47271 * 150.00108 * 3 2 1
7 7 C 1.37876 * 119.99882 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00469 * 359.97438 * 7 2 1
9 9 C 1.50705 * 119.99880 * 180.02562 * 7 2 1
10 10 H 1.08988 * 110.02201 * 58.59543 * 9 7 2
11 11 C 1.54619 * 110.03038 * 297.14858 * 9 7 2
12 12 C 1.53996 * 103.46256 * 263.77204 * 11 9 7
13 13 H 1.08991 * 108.59415 * 76.53655 * 12 11 9
14 14 C 1.50967 * 112.60442 * 197.64483 * 12 11 9
15 15 C 1.52836 * 111.50581 * 64.77856 * 14 12 11
16 16 C 1.53296 * 108.23630 * 59.02577 * 15 14 12
17 17 C 1.52624 * 108.53405 * 296.32266 * 16 15 14
18 18 C 1.53052 * 110.87914 * 62.21009 * 17 16 15
19 19 H 1.09004 * 112.18378 * 71.86338 * 18 17 16
20 20 C 1.54014 * 110.03505 * 179.97438 * 9 7 2
21 21 H 0.96995 * 120.00327 * 359.97438 * 1 2 3
22 22 H 1.09009 * 110.62218 * 145.27881 * 11 9 7
23 23 H 1.09002 * 110.62721 * 22.27151 * 11 9 7
24 24 H 1.09002 * 109.06983 * 304.25590 * 14 12 11
25 25 H 1.09002 * 109.01812 * 185.26372 * 14 12 11
26 26 H 1.08994 * 109.71339 * 299.33832 * 15 14 12
27 27 H 1.08997 * 109.74646 * 178.72944 * 15 14 12
28 28 H 1.08991 * 109.62714 * 56.04125 * 16 15 14
29 29 H 1.09003 * 109.62178 * 176.61085 * 16 15 14
30 30 H 1.08994 * 109.19684 * 182.57016 * 17 16 15
31 31 H 1.09002 * 109.19707 * 301.85235 * 17 16 15
32 32 H 1.09003 * 110.08973 * 1.81500 * 20 9 7
33 33 H 1.08990 * 110.13915 * 240.26016 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 0.0000
10 1 3.8843 -0.6611 0.8746
11 6 4.0416 -0.5303 -1.2919
12 6 4.3174 -1.7262 -2.2222
13 1 3.3670 -2.0876 -2.6147
14 6 5.2271 -1.3686 -3.3727
15 6 6.6232 -0.9835 -2.8843
16 6 7.2050 -2.1714 -2.1095
17 6 6.3402 -2.4165 -0.8760
18 6 4.9103 -2.7865 -1.2772
19 1 4.8481 -3.7886 -1.7016
20 6 4.0392 -2.6410 -0.0001
21 1 -0.4850 0.8400 0.0004
22 1 4.9609 0.0201 -1.0914
23 1 3.2864 0.1261 -1.7241
24 1 4.7969 -0.5295 -3.9194
25 1 5.3075 -2.2256 -4.0415
26 1 6.5570 -0.1146 -2.2298
27 1 7.2612 -0.7532 -3.7375
28 1 7.2003 -3.0589 -2.7422
29 1 8.2255 -1.9432 -1.8017
30 1 6.7706 -3.2302 -0.2925
31 1 6.3191 -1.5123 -0.2677
32 1 3.2062 -3.3433 -0.0330
33 1 4.6443 -2.8198 0.8886
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000250894379.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:15
Heat of formation + Delta-G solvation = -52.309552 kcal
Electronic energy + Delta-G solvation = -12953.520374 eV
Core-core repulsion = 10976.640055 eV
Total energy + Delta-G solvation = -1976.880319 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 194.137 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.80605 -36.08676 -34.07646 -32.40076 -30.32498 -27.74969 -26.14299 -23.22567
-22.57641 -20.66663 -19.47456 -18.51846 -16.94944 -16.29153 -15.55962 -14.99057
-14.92052 -14.72811 -14.64599 -13.78302 -13.23099 -12.93890 -12.73257 -12.61114
-12.21730 -12.18373 -11.95213 -11.75200 -11.51269 -11.21294 -11.08915 -10.76446
-10.70770 -10.67993 -10.59016 -8.29338 -6.31017 1.30155 1.33318 1.44712
2.33492 3.05046 3.79196 3.84079 3.92653 4.29886 4.36690 4.44348
4.53789 4.64754 4.66929 4.81287 4.86495 4.92360 4.98107 5.05095
5.06335 5.21844 5.25096 5.28862 5.38486 5.46192 5.53682 5.59543
5.67145 5.70473 5.77367 5.85580 6.33529 6.76309 7.33505 8.87700
Molecular weight = 194.14amu
Principal moments of inertia in cm(-1)
A = 0.048456 B = 0.012970 C = 0.011826
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 577.699638 B = 2158.252213 C = 2367.166917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.954 5.954
2 C 0.007 3.993
3 Si 0.944 3.056
4 H -0.266 1.266
5 H -0.296 1.296
6 H -0.245 1.245
7 C -0.508 4.508
8 H 0.028 0.972
9 C 0.003 3.997
10 H 0.018 0.982
11 C -0.120 4.120
12 C -0.077 4.077
13 H 0.041 0.959
14 C -0.106 4.106
15 C -0.118 4.118
16 C -0.112 4.112
17 C -0.109 4.109
18 C -0.076 4.076
19 H 0.081 0.919
20 C -0.105 4.105
21 H 0.264 0.736
22 H 0.060 0.940
23 H 0.034 0.966
24 H 0.051 0.949
25 H 0.071 0.929
26 H 0.053 0.947
27 H 0.078 0.922
28 H 0.070 0.930
29 H 0.074 0.926
30 H 0.069 0.931
31 H 0.050 0.950
32 H 0.035 0.965
33 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.931 -2.190 -5.282 16.926
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.596 5.596
2 C -0.189 4.189
3 Si 0.770 3.230
4 H -0.191 1.191
5 H -0.223 1.223
6 H -0.168 1.168
7 C -0.546 4.546
8 H 0.046 0.954
9 C -0.016 4.016
10 H 0.036 0.964
11 C -0.157 4.157
12 C -0.096 4.096
13 H 0.059 0.941
14 C -0.143 4.143
15 C -0.156 4.156
16 C -0.149 4.149
17 C -0.146 4.146
18 C -0.094 4.094
19 H 0.099 0.901
20 C -0.143 4.143
21 H 0.073 0.927
22 H 0.079 0.921
23 H 0.052 0.948
24 H 0.070 0.930
25 H 0.089 0.911
26 H 0.071 0.929
27 H 0.096 0.904
28 H 0.089 0.911
29 H 0.093 0.907
30 H 0.088 0.912
31 H 0.069 0.931
32 H 0.054 0.946
33 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 15.778 -2.092 -5.268 16.765
hybrid contribution -0.878 0.792 0.246 1.208
sum 14.899 -1.300 -5.021 15.776
Atomic orbital electron populations
1.70065 1.08229 1.27846 1.53418 1.25921 0.95419 1.03115 0.94444
0.85865 0.79550 0.78708 0.78917 1.19122 1.22267 1.16848 1.21494
0.91586 0.92512 1.49055 0.95398 1.19824 0.93348 0.94546 0.93852
0.96354 1.22604 0.98246 0.97534 0.97329 1.21154 0.97732 0.95415
0.95284 0.94088 1.21003 0.95559 1.01134 0.96637 1.21593 0.95453
0.98310 1.00202 1.21502 0.98575 0.98377 0.96458 1.21526 0.93675
1.01254 0.98183 1.21910 0.95111 0.97998 0.94373 0.90095 1.22426
0.97740 0.96304 0.97797 0.92743 0.92125 0.94772 0.93003 0.91057
0.92866 0.90364 0.91146 0.90712 0.91215 0.93083 0.94605 0.92028
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -61.68 13.96 21.45 0.30 -61.38 16
2 C 0.01 0.42 5.36 84.66 0.45 0.88 16
3 Si 0.94 46.32 24.71 68.60 1.70 48.02 16
4 H -0.27 -12.44 6.91 99.48 0.69 -11.75 16
5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16
6 H -0.24 -11.16 6.50 99.48 0.65 -10.51 16
7 C -0.51 -30.07 9.08 25.60 0.23 -29.84 16
8 H 0.03 1.83 7.57 -2.91 -0.02 1.81 16
9 C 0.00 0.15 2.29 -10.64 -0.02 0.12 16
10 H 0.02 0.89 7.12 -2.39 -0.02 0.87 16
11 C -0.12 -5.06 3.80 31.48 0.12 -4.94 16
12 C -0.08 -2.79 2.71 -10.81 -0.03 -2.82 16
13 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16
14 C -0.11 -2.98 5.38 29.88 0.16 -2.82 16
15 C -0.12 -2.78 5.79 30.64 0.18 -2.60 16
16 C -0.11 -2.39 5.93 30.57 0.18 -2.21 16
17 C -0.11 -2.88 4.62 30.49 0.14 -2.74 16
18 C -0.08 -2.46 3.47 -9.69 -0.03 -2.49 16
19 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16
20 C -0.11 -4.22 5.79 31.72 0.18 -4.04 16
21 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16
22 H 0.06 2.30 6.04 -2.38 -0.01 2.29 16
23 H 0.03 1.60 5.14 -2.39 -0.01 1.59 16
24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
26 H 0.05 1.37 6.75 -2.39 -0.02 1.35 16
27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
31 H 0.05 1.49 7.05 -2.39 -0.02 1.47 16
32 H 0.04 1.56 7.38 -2.39 -0.02 1.55 16
33 H 0.06 2.22 7.76 -2.39 -0.02 2.20 16
Total: -1.00 -66.00 241.66 4.54 -61.46
By element:
Atomic # 1 Polarization: 4.42 SS G_CDS: 0.98 Total: 5.40 kcal
Atomic # 6 Polarization: -55.06 SS G_CDS: 1.56 Total: -53.50 kcal
Atomic # 7 Polarization: -61.68 SS G_CDS: 0.30 Total: -61.38 kcal
Atomic # 14 Polarization: 46.32 SS G_CDS: 1.70 Total: 48.02 kcal
Total: -66.00 4.54 -61.46 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000250894379.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.153 kcal
(2) G-P(sol) polarization free energy of solvation -66.001 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.847 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.463 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.310 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds