Wall clock time and date at job start Mon Mar 30 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 C 1.52998 * 109.46937 * 240.00060 * 2 1 3 5 5 N 1.46498 * 109.47042 * 120.00094 * 2 1 3 6 6 C 1.34499 * 125.68036 * 75.31824 * 5 2 1 7 7 C 1.39281 * 107.19299 * 180.14068 * 6 5 2 8 8 C 1.41589 * 126.55826 * 179.87229 * 7 6 5 9 9 H 1.07994 * 120.00258 * 10.14070 * 8 7 6 10 10 C 1.39699 * 119.99682 * 190.13980 * 8 7 6 11 11 N 1.31028 * 120.00104 * 9.33506 * 10 8 7 12 12 Si 1.86803 * 119.99680 * 189.32894 * 10 8 7 13 13 H 1.48500 * 109.47137 * 265.01912 * 12 10 8 14 14 H 1.48495 * 109.47018 * 25.01938 * 12 10 8 15 15 H 1.48496 * 109.46772 * 145.02172 * 12 10 8 16 16 C 1.41888 * 106.87886 * 359.60904 * 7 6 5 17 17 N 1.30314 * 108.05262 * 0.24263 * 16 7 6 18 18 H 1.09001 * 109.47180 * 299.99713 * 1 2 3 19 19 H 1.09003 * 109.47401 * 59.99789 * 1 2 3 20 20 H 1.09002 * 109.46976 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47079 * 179.97438 * 3 2 1 22 22 H 1.09003 * 109.47223 * 300.00320 * 3 2 1 23 23 H 1.09001 * 109.46927 * 60.00132 * 3 2 1 24 24 H 1.09002 * 109.47283 * 300.00021 * 4 2 1 25 25 H 1.09003 * 109.46952 * 59.99876 * 4 2 1 26 26 H 1.08999 * 109.46787 * 179.97438 * 4 2 1 27 27 H 1.08004 * 126.40037 * 0.02562 * 6 5 2 28 28 H 0.96998 * 119.99600 * 179.97438 * 11 10 8 29 29 H 1.08005 * 125.96867 * 180.20022 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1961 6 6 2.0187 -2.0218 1.3882 7 6 2.5616 -2.2557 2.6493 8 6 2.7512 -3.5164 3.2653 9 1 2.6185 -4.4225 2.6929 10 6 3.1099 -3.5881 4.6136 11 7 3.0931 -2.5074 5.3543 12 14 3.6134 -5.2247 5.3603 13 1 2.4352 -5.8577 6.0056 14 1 4.1321 -6.1171 4.2928 15 1 4.6730 -5.0001 6.3761 16 6 2.8939 -0.9893 3.1961 17 7 2.5671 -0.0756 2.3263 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 3.1300 1.4425 0.0005 22 1 1.6766 1.9564 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 1.6766 -1.7489 -1.2493 25 1 1.6766 -0.2074 -2.1392 26 1 3.1299 -0.7208 -1.2495 27 1 1.6628 -2.7695 0.6948 28 1 3.3418 -2.5574 6.2906 29 1 3.3392 -0.8134 4.1643 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258433796.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:09 Heat of formation + Delta-G solvation = 41.270573 kcal Electronic energy + Delta-G solvation = -12165.347172 eV Core-core repulsion = 10088.984449 eV Total energy + Delta-G solvation = -2076.362723 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.29130 -37.45087 -35.09102 -31.04391 -30.71230 -28.28512 -28.25071 -26.49111 -22.78796 -21.30224 -19.93850 -18.59547 -17.09342 -16.51887 -15.77414 -15.12742 -14.90763 -14.40214 -14.20455 -13.50187 -13.19699 -13.09607 -12.95477 -12.85880 -12.69099 -12.58289 -12.42444 -12.04670 -11.88060 -11.75129 -11.04340 -10.74331 -9.65180 -9.07162 -8.35583 -5.97354 1.32353 1.44807 1.58162 1.61321 2.19639 2.35065 2.43141 3.57234 3.74073 3.95373 4.06746 4.46743 4.57396 4.67917 4.76377 4.79158 4.87510 4.89834 5.04202 5.10542 5.30662 5.34741 5.39910 5.62526 5.72603 6.13845 6.59776 6.82584 7.14863 7.19146 7.57917 8.68469 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.072217 B = 0.009380 C = 0.008833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.624925 B = 2984.223988 C = 3169.247912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.169 3.831 3 C -0.132 4.132 4 C -0.147 4.147 5 N -0.368 5.368 6 C -0.102 4.102 7 C -0.063 4.063 8 C -0.479 4.479 9 H 0.067 0.933 10 C 0.021 3.979 11 N -0.872 5.872 12 Si 0.985 3.015 13 H -0.269 1.269 14 H -0.262 1.262 15 H -0.273 1.273 16 C 0.000 4.000 17 N -0.346 5.346 18 H 0.040 0.960 19 H 0.107 0.893 20 H 0.054 0.946 21 H 0.044 0.956 22 H 0.103 0.897 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.047 0.953 27 H 0.161 0.839 28 H 0.277 0.723 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 2.528 -9.719 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.205 4.205 5 N -0.157 5.157 6 C -0.245 4.245 7 C -0.073 4.073 8 C -0.513 4.513 9 H 0.085 0.915 10 C -0.186 4.186 11 N -0.504 5.504 12 Si 0.807 3.193 13 H -0.194 1.194 14 H -0.186 1.186 15 H -0.198 1.198 16 C -0.185 4.185 17 N -0.170 5.170 18 H 0.059 0.941 19 H 0.125 0.875 20 H 0.073 0.927 21 H 0.064 0.936 22 H 0.121 0.879 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.127 0.873 26 H 0.067 0.933 27 H 0.178 0.822 28 H 0.087 0.913 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.903 3.875 -9.860 10.985 hybrid contribution 0.297 -1.608 1.012 1.923 sum -2.606 2.267 -8.848 9.498 Atomic orbital electron populations 1.22199 0.92915 1.02524 1.03096 1.20885 0.94795 0.93745 0.81954 1.21822 1.00837 0.93290 1.03017 1.22145 1.01134 1.01075 0.96135 1.48157 1.50260 1.03803 1.13462 1.22453 1.14850 0.86299 1.00932 1.18573 1.01214 0.94515 0.93019 1.18972 1.44760 0.92089 0.95508 0.91475 1.26501 0.93619 1.01427 0.97048 1.69757 1.41748 1.31085 1.07785 0.85150 0.78382 0.77749 0.78002 1.19440 1.18623 1.19824 1.24370 1.03316 0.91530 0.99273 1.76397 1.20426 1.24042 0.96118 0.94098 0.87483 0.92733 0.93632 0.87862 0.93382 0.92122 0.87343 0.93341 0.82152 0.91303 0.81026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 8.72 71.98 0.63 -3.54 15 2 C 0.17 5.50 1.23 3.60 0.00 5.50 15 3 C -0.13 -3.88 8.07 71.98 0.58 -3.30 15 4 C -0.15 -3.84 8.28 71.98 0.60 -3.25 15 5 N -0.37 -16.74 3.41 -304.87 -1.04 -17.78 15 6 C -0.10 -5.07 10.64 84.54 0.90 -4.17 15 7 C -0.06 -3.63 5.88 -21.30 -0.13 -3.76 15 8 C -0.48 -27.54 9.39 23.45 0.22 -27.32 15 9 H 0.07 3.69 7.86 -2.91 -0.02 3.66 15 10 C 0.02 1.16 5.45 85.17 0.46 1.62 15 11 N -0.87 -49.21 10.63 21.79 0.23 -48.98 15 12 Si 0.98 41.64 29.57 68.60 2.03 43.67 15 13 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 14 H -0.26 -10.75 7.11 99.48 0.71 -10.05 15 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 16 C 0.00 -0.01 10.86 85.82 0.93 0.92 15 17 N -0.35 -18.19 11.52 -55.93 -0.64 -18.84 15 18 H 0.04 1.29 8.14 -2.39 -0.02 1.27 15 19 H 0.11 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.04 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.10 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.05 1.59 8.03 -2.39 -0.02 1.57 15 24 H 0.06 1.61 7.33 -2.39 -0.02 1.59 15 25 H 0.11 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 27 H 0.16 7.00 7.52 -2.91 -0.02 6.97 15 28 H 0.28 14.32 8.30 -92.71 -0.77 13.55 15 29 H 0.17 10.30 6.14 -2.91 -0.02 10.29 15 Total: -1.00 -66.57 247.14 5.89 -60.68 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.12 Total: 18.53 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 4.20 Total: -37.28 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -1.45 Total: -85.59 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -66.57 5.89 -60.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258433796.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.948 kcal (2) G-P(sol) polarization free energy of solvation -66.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds