Wall clock time and date at job start Mon Mar 30 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46888 * 2 1 4 4 C 1.50705 * 109.47046 * 179.97438 * 3 2 1 5 5 N 1.32749 * 125.69065 * 270.26463 * 4 3 2 6 6 C 1.32978 * 109.22532 * 180.20878 * 5 4 3 7 7 C 1.40000 * 125.96724 * 179.82872 * 6 5 4 8 8 H 1.08001 * 120.00520 * 173.59368 * 7 6 5 9 9 C 1.40241 * 119.99464 * 353.87040 * 7 6 5 10 10 N 1.30685 * 120.00390 * 6.01852 * 9 7 6 11 11 Si 1.86802 * 119.99794 * 186.01403 * 9 7 6 12 12 H 1.48504 * 109.47156 * 94.98126 * 11 9 7 13 13 H 1.48494 * 109.47519 * 214.98207 * 11 9 7 14 14 H 1.48497 * 109.47105 * 334.98722 * 11 9 7 15 15 N 1.37540 * 108.07344 * 359.56625 * 6 5 4 16 16 H 0.97006 * 126.56092 * 180.22929 * 15 6 5 17 17 C 1.36215 * 125.68790 * 89.99984 * 4 3 2 18 18 C 1.50702 * 126.40453 * 359.96169 * 17 4 3 19 19 H 1.09004 * 109.46761 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47156 * 300.00291 * 1 2 3 21 21 H 1.08992 * 109.46922 * 60.00330 * 1 2 3 22 22 H 1.08998 * 109.47641 * 239.99543 * 2 1 3 23 23 H 1.09003 * 109.46806 * 119.99232 * 2 1 3 24 24 H 1.09000 * 109.47460 * 59.99895 * 3 2 1 25 25 H 1.08999 * 109.46776 * 299.99766 * 3 2 1 26 26 H 0.96998 * 120.00046 * 180.02562 * 10 9 7 27 27 H 1.08999 * 109.47135 * 269.97461 * 18 17 4 28 28 H 1.08998 * 109.47068 * 29.97661 * 18 17 4 29 29 H 1.09004 * 109.47311 * 149.97818 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.3210 1.4378 1.0791 6 6 5.5964 1.4441 0.7028 7 6 6.7057 1.4451 1.5568 8 1 7.7011 1.3461 1.1495 9 6 6.5241 1.5690 2.9419 10 7 5.3183 1.5650 3.4458 11 14 8.0057 1.7395 4.0667 12 1 8.2650 3.1780 4.3292 13 1 7.7359 1.0429 5.3500 14 1 9.1944 1.1334 3.4148 15 7 5.6356 1.4434 -0.6721 16 1 6.4310 1.4440 -1.2275 17 6 4.3421 1.4424 -1.1054 18 6 3.8793 1.4414 -2.5396 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 1.6766 1.9564 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 5.1927 1.6510 4.4037 27 1 3.7688 0.4135 -2.8849 28 1 2.9203 1.9543 -2.6123 29 1 4.6143 1.9557 -3.1589 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258484912.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:17 Heat of formation + Delta-G solvation = 3.364478 kcal Electronic energy + Delta-G solvation = -11995.717168 eV Core-core repulsion = 9917.710714 eV Total energy + Delta-G solvation = -2078.006455 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.79246 -36.05984 -35.18145 -32.74668 -32.00381 -28.96014 -28.07715 -24.63694 -22.44535 -21.95132 -20.01615 -18.81762 -17.49172 -16.41028 -15.71822 -15.44558 -14.82233 -14.55211 -13.94544 -13.81650 -13.45051 -13.10414 -12.91821 -12.79866 -12.76477 -12.39780 -12.04494 -11.97556 -11.83870 -11.43669 -11.05974 -9.99452 -9.70001 -8.76174 -8.31981 -6.24117 1.36572 1.43053 1.58127 1.81942 2.27966 2.72644 3.07718 3.61640 4.16522 4.26483 4.42290 4.55870 4.60321 4.72865 4.88317 4.89786 4.99078 5.15016 5.19096 5.21853 5.27327 5.35235 5.56979 5.61792 5.85458 6.17080 6.35850 6.76218 7.05238 7.56155 8.34857 8.64640 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.044809 B = 0.010468 C = 0.008741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.722964 B = 2674.081756 C = 3202.513794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.019 4.019 4 C -0.026 4.026 5 N -0.553 5.553 6 C 0.335 3.665 7 C -0.500 4.500 8 H 0.086 0.914 9 C 0.032 3.968 10 N -0.793 5.793 11 Si 0.995 3.005 12 H -0.266 1.266 13 H -0.272 1.272 14 H -0.254 1.254 15 N -0.614 5.614 16 H 0.406 0.594 17 C -0.135 4.135 18 C -0.044 4.044 19 H 0.063 0.937 20 H 0.050 0.950 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.027 0.973 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.274 0.726 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 -0.862 -6.608 7.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.058 4.058 4 C -0.158 4.158 5 N -0.276 5.276 6 C 0.088 3.912 7 C -0.540 4.540 8 H 0.105 0.895 9 C -0.187 4.187 10 N -0.419 5.419 11 Si 0.815 3.185 12 H -0.191 1.191 13 H -0.197 1.197 14 H -0.178 1.178 15 N -0.223 5.223 16 H 0.243 0.757 17 C -0.249 4.249 18 C -0.102 4.102 19 H 0.082 0.918 20 H 0.069 0.931 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.565 -0.867 -5.658 6.744 hybrid contribution 1.398 0.080 -0.306 1.433 sum -2.168 -0.787 -5.965 6.395 Atomic orbital electron populations 1.21720 0.93570 1.02177 1.02269 1.21333 0.96845 0.95762 1.00413 1.19743 0.87786 0.97260 1.00970 1.21199 0.96727 1.08157 0.89707 1.71052 1.00067 1.28453 1.28071 1.20485 0.93642 0.97407 0.79689 1.18530 0.91638 1.52252 0.91530 0.89540 1.26733 0.99808 0.92516 0.99604 1.70168 1.24329 1.34021 1.13386 0.85027 0.77531 0.78981 0.76935 1.19142 1.19705 1.17790 1.43277 1.07055 1.64349 1.07570 0.75716 1.21178 0.84326 1.21978 0.97371 1.19918 1.01095 1.01600 0.87570 0.91814 0.93126 0.91067 0.92282 0.95403 0.93839 0.89908 0.91547 0.91999 0.90279 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 15 2 C -0.11 -3.75 5.92 30.60 0.18 -3.57 15 3 C -0.02 -0.78 5.55 29.85 0.17 -0.61 15 4 C -0.03 -1.30 6.33 41.95 0.27 -1.04 15 5 N -0.55 -33.52 9.43 -182.23 -1.72 -35.24 15 6 C 0.33 19.50 7.61 133.59 1.02 20.51 15 7 C -0.50 -28.40 9.45 23.18 0.22 -28.19 15 8 H 0.09 4.50 7.86 -2.91 -0.02 4.47 15 9 C 0.03 1.75 5.49 85.35 0.47 2.22 15 10 N -0.79 -46.77 11.92 21.88 0.26 -46.51 15 11 Si 0.99 40.64 29.57 68.60 2.03 42.67 15 12 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 13 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 14 H -0.25 -9.79 7.11 99.48 0.71 -9.09 15 15 N -0.61 -29.76 6.25 -179.88 -1.13 -30.89 15 16 H 0.41 16.66 8.96 -92.70 -0.83 15.83 15 17 C -0.14 -6.14 7.26 41.38 0.30 -5.84 15 18 C -0.04 -1.40 10.23 71.24 0.73 -0.67 15 19 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 20 H 0.05 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.07 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.06 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.08 2.79 7.16 -2.39 -0.02 2.78 15 26 H 0.27 14.74 8.29 -92.71 -0.77 13.97 15 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.08 2.23 7.17 -2.39 -0.02 2.22 15 29 H 0.06 1.72 8.14 -2.38 -0.02 1.70 15 Total: -1.00 -70.80 250.81 3.81 -66.98 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.31 Total: 23.14 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.06 Total: -20.16 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -2.58 Total: -112.64 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -70.80 3.81 -66.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258484912.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.347 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds