Wall clock time and date at job start Mon Mar 30 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 C 1.53002 * 109.47278 * 239.99691 * 2 1 3 5 5 N 1.46502 * 109.47138 * 119.99575 * 2 1 3 6 6 N 1.40033 * 126.20211 * 0.02835 * 5 2 1 7 7 C 1.31226 * 109.11326 * 179.97438 * 6 5 2 8 8 C 1.38703 * 109.07849 * 0.26410 * 7 6 5 9 9 C 1.37452 * 126.20699 * 179.97438 * 5 2 1 10 10 C 1.40235 * 126.65901 * 0.06441 * 9 5 2 11 11 H 1.07999 * 120.00252 * 353.37309 * 10 9 5 12 12 C 1.40173 * 120.00185 * 173.37621 * 10 9 5 13 13 N 1.30758 * 119.99648 * 6.88508 * 12 10 9 14 14 Si 1.86797 * 119.99942 * 186.89100 * 12 10 9 15 15 H 1.48501 * 109.47403 * 94.98629 * 14 12 10 16 16 H 1.48503 * 109.47031 * 214.98190 * 14 12 10 17 17 H 1.48495 * 109.47066 * 334.98434 * 14 12 10 18 18 H 1.09000 * 109.47104 * 300.00499 * 1 2 3 19 19 H 1.09003 * 109.46958 * 60.00217 * 1 2 3 20 20 H 1.08999 * 109.47326 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47163 * 180.02562 * 3 2 1 22 22 H 1.09003 * 109.46915 * 299.99809 * 3 2 1 23 23 H 1.09000 * 109.47427 * 59.99698 * 3 2 1 24 24 H 1.08999 * 109.47011 * 300.00278 * 4 2 1 25 25 H 1.08995 * 109.46905 * 59.99856 * 4 2 1 26 26 H 1.08991 * 109.46877 * 180.02562 * 4 2 1 27 27 H 1.07999 * 125.46252 * 179.97438 * 7 6 5 28 28 H 1.08004 * 126.23028 * 179.73280 * 8 7 6 29 29 H 0.97006 * 119.99511 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1962 6 7 1.2287 -1.2692 2.1975 7 6 2.0103 -1.7964 3.1102 8 6 3.3333 -1.5826 2.7525 9 6 3.3346 -0.8888 1.5388 10 6 4.4604 -0.4702 0.8149 11 1 4.3399 -0.0289 -0.1634 12 6 5.7421 -0.6245 1.3610 13 7 5.9005 -1.2785 2.4822 14 14 7.2236 0.1042 0.4873 15 1 7.5271 1.4410 1.0585 16 1 8.3952 -0.7897 0.6701 17 1 6.9262 0.2408 -0.9611 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 3.1301 1.4424 -0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6767 1.9564 0.8899 24 1 1.6766 -1.7490 -1.2492 25 1 1.6767 -0.2076 -2.1392 26 1 3.1299 -0.7217 -1.2489 27 1 1.6770 -2.3101 3.9998 28 1 4.2038 -1.8976 3.3088 29 1 6.7875 -1.3850 2.8603 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258498424.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:12 Heat of formation + Delta-G solvation = 56.129676 kcal Electronic energy + Delta-G solvation = -12549.051595 eV Core-core repulsion = 10473.333211 eV Total energy + Delta-G solvation = -2075.718384 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08470 -35.51930 -33.60283 -29.39600 -28.01083 -26.69419 -26.50554 -25.03640 -20.96188 -19.34111 -18.02116 -16.74555 -15.30374 -14.34856 -13.95887 -13.61175 -13.16806 -12.43979 -12.18363 -11.95862 -11.56399 -11.51936 -11.27143 -11.21825 -11.10011 -11.06660 -10.61215 -10.39298 -10.30174 -9.52257 -9.29985 -8.55843 -7.66399 -6.68976 -6.58271 -4.39035 2.95314 3.07958 3.10991 3.71726 3.88903 4.17766 4.62154 5.36214 5.39442 5.63899 5.67867 6.03252 6.09445 6.22189 6.32639 6.34657 6.47074 6.57686 6.63182 6.83346 6.94072 7.20086 7.46739 7.61005 7.94560 8.20233 8.58480 8.80607 8.93491 9.32317 9.76825 10.31220 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.015259 C = 0.011762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.259991 B = 1834.554229 C = 2379.997498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.203 3.797 3 C -0.162 4.162 4 C -0.163 4.163 5 N -0.419 5.419 6 N -0.393 5.393 7 C 0.032 3.968 8 C -0.362 4.362 9 C 0.256 3.744 10 C -0.452 4.452 11 H 0.080 0.920 12 C 0.076 3.924 13 N -0.787 5.787 14 Si 0.917 3.083 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 H 0.059 0.941 19 H 0.053 0.947 20 H 0.059 0.941 21 H 0.078 0.922 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.142 0.858 28 H 0.155 0.845 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 3.033 -4.980 6.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.117 3.883 3 C -0.220 4.220 4 C -0.221 4.221 5 N -0.208 5.208 6 N -0.216 5.216 7 C -0.149 4.149 8 C -0.393 4.393 9 C 0.136 3.864 10 C -0.488 4.488 11 H 0.098 0.902 12 C -0.143 4.143 13 N -0.414 5.414 14 Si 0.742 3.258 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.187 1.187 18 H 0.078 0.922 19 H 0.072 0.928 20 H 0.078 0.922 21 H 0.096 0.904 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.159 0.841 28 H 0.172 0.828 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.868 3.186 -5.231 6.763 hybrid contribution 1.591 0.126 0.002 1.596 sum -1.277 3.312 -5.229 6.320 Atomic orbital electron populations 1.21771 0.93907 1.02330 1.00970 1.19964 0.93924 0.91099 0.83268 1.22270 1.03672 0.95119 1.00929 1.22308 1.03585 1.00206 0.95995 1.48712 1.03946 1.49708 1.18466 1.76802 1.19460 1.23578 1.01747 1.23098 0.94147 1.00048 0.97579 1.22126 0.95835 1.18917 1.02453 1.18688 0.82607 0.92026 0.93058 1.18732 0.89150 1.37719 1.03224 0.90208 1.25764 1.00282 0.93600 0.94632 1.69764 1.24168 1.30673 1.16771 0.86152 0.79999 0.79360 0.80282 1.19563 1.20178 1.18713 0.92211 0.92820 0.92220 0.90357 0.92520 0.92828 0.92822 0.92470 0.90401 0.84080 0.82751 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.99 37.16 0.30 -2.09 15 2 C 0.20 4.16 1.06 -131.82 -0.14 4.02 15 3 C -0.16 -3.03 8.48 37.16 0.32 -2.72 15 4 C -0.16 -3.05 8.48 37.16 0.32 -2.73 15 5 N -0.42 -10.62 3.52 -45.97 -0.16 -10.78 15 6 N -0.39 -10.32 11.62 30.45 0.35 -9.96 15 7 C 0.03 0.83 11.93 -17.64 -0.21 0.62 15 8 C -0.36 -10.17 9.77 -38.82 -0.38 -10.55 15 9 C 0.26 7.04 6.31 -84.01 -0.53 6.51 15 10 C -0.45 -11.80 7.46 -38.11 -0.28 -12.08 15 11 H 0.08 1.95 4.61 -52.49 -0.24 1.70 15 12 C 0.08 1.91 5.49 -17.28 -0.09 1.82 15 13 N -0.79 -20.49 10.34 55.56 0.57 -19.91 15 14 Si 0.92 18.60 29.57 -169.99 -5.03 13.57 15 15 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 16 H -0.28 -5.51 7.11 56.52 0.40 -5.10 15 17 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 18 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 21 H 0.08 1.59 5.72 -51.93 -0.30 1.29 15 22 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.08 1.58 5.46 -51.93 -0.28 1.29 15 27 H 0.14 3.16 8.06 -52.49 -0.42 2.73 15 28 H 0.16 4.45 5.77 -52.48 -0.30 4.15 15 29 H 0.28 6.52 8.29 -40.82 -0.34 6.19 15 LS Contribution 238.25 15.07 3.59 3.59 Total: -1.00 -29.41 238.25 -5.02 -34.43 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.64 Total: 6.29 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.71 Total: -17.21 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.77 Total: -40.66 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.41 -5.02 -34.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258498424.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.557 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds