Wall clock time and date at job start Mon Mar 30 2020 02:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 C 1.53002 * 109.47278 * 239.99691 * 2 1 3 5 5 N 1.46502 * 109.47138 * 119.99575 * 2 1 3 6 6 N 1.40033 * 126.20211 * 0.02835 * 5 2 1 7 7 C 1.31226 * 109.11326 * 179.97438 * 6 5 2 8 8 C 1.38703 * 109.07849 * 0.26410 * 7 6 5 9 9 C 1.37452 * 126.20699 * 179.97438 * 5 2 1 10 10 C 1.40235 * 126.65901 * 0.06441 * 9 5 2 11 11 H 1.07999 * 120.00252 * 353.37309 * 10 9 5 12 12 C 1.40173 * 120.00185 * 173.37621 * 10 9 5 13 13 N 1.30758 * 119.99648 * 6.88508 * 12 10 9 14 14 Si 1.86797 * 119.99942 * 186.89100 * 12 10 9 15 15 H 1.48501 * 109.47403 * 94.98629 * 14 12 10 16 16 H 1.48503 * 109.47031 * 214.98190 * 14 12 10 17 17 H 1.48495 * 109.47066 * 334.98434 * 14 12 10 18 18 H 1.09000 * 109.47104 * 300.00499 * 1 2 3 19 19 H 1.09003 * 109.46958 * 60.00217 * 1 2 3 20 20 H 1.08999 * 109.47326 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47163 * 180.02562 * 3 2 1 22 22 H 1.09003 * 109.46915 * 299.99809 * 3 2 1 23 23 H 1.09000 * 109.47427 * 59.99698 * 3 2 1 24 24 H 1.08999 * 109.47011 * 300.00278 * 4 2 1 25 25 H 1.08995 * 109.46905 * 59.99856 * 4 2 1 26 26 H 1.08991 * 109.46877 * 180.02562 * 4 2 1 27 27 H 1.07999 * 125.46252 * 179.97438 * 7 6 5 28 28 H 1.08004 * 126.23028 * 179.73280 * 8 7 6 29 29 H 0.97006 * 119.99511 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1962 6 7 1.2287 -1.2692 2.1975 7 6 2.0103 -1.7964 3.1102 8 6 3.3333 -1.5826 2.7525 9 6 3.3346 -0.8888 1.5388 10 6 4.4604 -0.4702 0.8149 11 1 4.3399 -0.0289 -0.1634 12 6 5.7421 -0.6245 1.3610 13 7 5.9005 -1.2785 2.4822 14 14 7.2236 0.1042 0.4873 15 1 7.5271 1.4410 1.0585 16 1 8.3952 -0.7897 0.6701 17 1 6.9262 0.2408 -0.9611 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 3.1301 1.4424 -0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6767 1.9564 0.8899 24 1 1.6766 -1.7490 -1.2492 25 1 1.6767 -0.2076 -2.1392 26 1 3.1299 -0.7217 -1.2489 27 1 1.6770 -2.3101 3.9998 28 1 4.2038 -1.8976 3.3088 29 1 6.7875 -1.3850 2.8603 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258498424.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:11 Heat of formation + Delta-G solvation = 38.063759 kcal Electronic energy + Delta-G solvation = -12549.834992 eV Core-core repulsion = 10473.333211 eV Total energy + Delta-G solvation = -2076.501781 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.99420 -37.17746 -35.54466 -31.33191 -29.92665 -28.17384 -28.01683 -27.04337 -22.77809 -21.32986 -19.86005 -18.62266 -17.15878 -16.04078 -15.60243 -15.25658 -14.87666 -14.20666 -14.04416 -13.69906 -13.25399 -12.99803 -12.91615 -12.86850 -12.80758 -12.61179 -12.23383 -11.96874 -11.94833 -11.34729 -11.16709 -10.57963 -9.63502 -8.71904 -8.48378 -6.41322 1.29624 1.42494 1.57199 1.83252 2.17934 2.42503 2.60012 3.40731 3.84273 4.05563 4.17234 4.50888 4.69717 4.72869 4.83631 4.86803 4.89813 4.96199 5.06467 5.20110 5.36771 5.43773 5.61219 5.63717 5.99127 6.13639 6.59173 6.80014 6.91431 7.35817 7.75003 8.44014 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.015259 C = 0.011762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.259991 B = 1834.554229 C = 2379.997498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.181 3.819 3 C -0.154 4.154 4 C -0.155 4.155 5 N -0.423 5.423 6 N -0.404 5.404 7 C 0.025 3.975 8 C -0.403 4.403 9 C 0.234 3.766 10 C -0.470 4.470 11 H 0.094 0.906 12 C 0.030 3.970 13 N -0.818 5.818 14 Si 0.995 3.005 15 H -0.265 1.265 16 H -0.270 1.270 17 H -0.251 1.251 18 H 0.045 0.955 19 H 0.097 0.903 20 H 0.045 0.955 21 H 0.059 0.941 22 H 0.101 0.899 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.169 0.831 28 H 0.140 0.860 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 4.264 -6.934 8.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.097 3.903 3 C -0.213 4.213 4 C -0.213 4.213 5 N -0.213 5.213 6 N -0.227 5.227 7 C -0.156 4.156 8 C -0.434 4.434 9 C 0.114 3.886 10 C -0.506 4.506 11 H 0.111 0.889 12 C -0.187 4.187 13 N -0.445 5.445 14 Si 0.815 3.185 15 H -0.190 1.190 16 H -0.195 1.195 17 H -0.174 1.174 18 H 0.064 0.936 19 H 0.116 0.884 20 H 0.064 0.936 21 H 0.078 0.922 22 H 0.119 0.881 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.186 0.814 28 H 0.157 0.843 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.704 4.416 -7.192 8.863 hybrid contribution 1.503 -0.268 0.618 1.647 sum -1.201 4.148 -6.574 7.866 Atomic orbital electron populations 1.21726 0.91973 1.01907 1.02451 1.20573 0.95635 0.91869 0.82188 1.22217 1.02427 0.94158 1.02452 1.22248 1.02300 0.99883 0.96881 1.49115 1.03226 1.49584 1.19364 1.76694 1.20132 1.23648 1.02193 1.23483 0.93449 1.00125 0.98533 1.22219 0.96323 1.21099 1.03756 1.19065 0.84072 0.92169 0.93315 1.19113 0.89487 1.38067 1.03896 0.88855 1.26852 1.03196 0.93410 0.95217 1.69862 1.25453 1.31132 1.18073 0.84988 0.75636 0.78430 0.79425 1.18968 1.19452 1.17429 0.93585 0.88413 0.93576 0.92188 0.88056 0.94171 0.94130 0.88017 0.92267 0.81398 0.84302 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 7.99 71.98 0.58 -3.60 15 2 C 0.18 7.12 1.06 3.60 0.00 7.13 15 3 C -0.15 -5.45 8.48 71.98 0.61 -4.84 15 4 C -0.16 -5.47 8.48 71.98 0.61 -4.86 15 5 N -0.42 -21.52 3.52 -299.37 -1.05 -22.57 15 6 N -0.40 -21.40 11.62 -57.58 -0.67 -22.07 15 7 C 0.02 1.32 11.93 84.89 1.01 2.33 15 8 C -0.40 -23.35 9.77 22.76 0.22 -23.13 15 9 C 0.23 13.11 6.31 39.13 0.25 13.36 15 10 C -0.47 -24.59 7.46 23.23 0.17 -24.42 15 11 H 0.09 4.49 4.61 -2.91 -0.01 4.48 15 12 C 0.03 1.47 5.49 85.32 0.47 1.94 15 13 N -0.82 -43.27 10.34 21.87 0.23 -43.05 15 14 Si 1.00 37.26 29.57 68.60 2.03 39.29 15 15 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 16 H -0.27 -9.74 7.11 99.48 0.71 -9.03 15 17 H -0.25 -8.85 7.11 99.48 0.71 -8.14 15 18 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 19 H 0.10 2.42 8.14 -2.39 -0.02 2.41 15 20 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 21 H 0.06 2.33 5.72 -2.38 -0.01 2.32 15 22 H 0.10 2.63 8.14 -2.39 -0.02 2.61 15 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.10 2.63 8.14 -2.39 -0.02 2.61 15 26 H 0.06 2.30 5.46 -2.39 -0.01 2.29 15 27 H 0.17 7.59 8.06 -2.91 -0.02 7.57 15 28 H 0.14 8.37 5.77 -2.91 -0.02 8.36 15 29 H 0.28 13.55 8.29 -92.70 -0.77 12.78 15 Total: -1.00 -64.52 238.25 5.59 -58.92 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 1.14 Total: 25.56 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.92 Total: -36.08 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -1.50 Total: -87.69 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Total: -64.52 5.59 -58.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258498424.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.988 kcal (2) G-P(sol) polarization free energy of solvation -64.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds