Wall clock time and date at job start Mon Mar 30 2020 02:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47257 * 2 1 4 4 C 1.53010 * 109.47065 * 120.00030 * 2 1 3 5 5 C 1.50698 * 109.46835 * 174.99797 * 4 2 1 6 6 C 1.36217 * 126.40468 * 275.02043 * 5 4 2 7 7 N 1.32761 * 108.61922 * 179.71589 * 6 5 4 8 8 C 1.32982 * 109.22583 * 0.44376 * 7 6 5 9 9 C 1.40000 * 125.96693 * 179.82826 * 8 7 6 10 10 H 1.07996 * 120.00242 * 185.90626 * 9 8 7 11 11 C 1.40233 * 119.99679 * 5.90792 * 9 8 7 12 12 N 1.30695 * 120.00206 * 6.49321 * 11 9 8 13 13 Si 1.86795 * 120.00125 * 186.21901 * 11 9 8 14 14 H 1.48502 * 109.47236 * 265.29128 * 13 11 9 15 15 H 1.48508 * 109.46961 * 25.28654 * 13 11 9 16 16 H 1.48501 * 109.47420 * 145.28446 * 13 11 9 17 17 N 1.36420 * 126.40052 * 95.00075 * 5 4 2 18 18 H 0.97000 * 126.55766 * 0.04303 * 17 5 4 19 19 H 1.09001 * 109.46889 * 299.99683 * 1 2 3 20 20 H 1.09000 * 109.47389 * 60.00125 * 1 2 3 21 21 H 1.09006 * 109.47374 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47455 * 239.99873 * 2 1 3 23 23 H 1.08999 * 109.47278 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.47249 * 299.99987 * 3 2 1 25 25 H 1.08998 * 109.47318 * 60.00016 * 3 2 1 26 26 H 1.08997 * 109.46817 * 54.99810 * 4 2 1 27 27 H 1.08996 * 109.47029 * 295.00044 * 4 2 1 28 28 H 1.07997 * 125.68737 * 359.95144 * 6 5 4 29 29 H 0.96996 * 120.00122 * 179.73146 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5418 -0.8295 1.1889 6 6 4.2576 -1.8000 0.5555 7 7 5.5508 -1.5498 0.7219 8 6 5.6931 -0.4488 1.4540 9 6 6.9077 0.1291 1.8423 10 1 6.9133 0.9717 2.5178 11 6 8.1171 -0.3862 1.3541 12 7 8.1079 -1.3209 0.4407 13 14 9.7414 0.2687 2.0038 14 1 10.2379 1.3412 1.1046 15 1 9.5427 0.8195 3.3685 16 1 10.7349 -0.8339 2.0548 17 7 4.4387 0.0266 1.7580 18 1 4.2314 0.8188 2.2780 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 3.1299 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6053 -1.7198 1.2952 27 1 1.7516 -0.1584 2.1370 28 1 3.8424 -2.6320 0.0062 29 1 8.9444 -1.6746 0.1002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259136991.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:05 Heat of formation + Delta-G solvation = 25.738197 kcal Electronic energy + Delta-G solvation = -11963.461204 eV Core-core repulsion = 9886.424946 eV Total energy + Delta-G solvation = -2077.036258 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.82296 -35.81541 -33.22500 -30.52212 -29.38941 -26.84907 -26.76480 -23.51833 -20.08100 -19.88621 -19.08706 -16.85278 -15.66423 -14.82080 -14.18481 -13.97118 -13.29198 -12.87723 -12.58632 -12.17735 -12.02433 -11.60765 -11.50151 -11.17558 -11.10396 -10.58947 -10.49782 -10.33333 -10.25597 -10.08648 -9.11666 -8.13353 -7.71225 -6.87902 -6.35552 -4.19081 3.08247 3.19308 3.22612 3.70953 4.08163 4.73935 4.88644 5.28081 5.36909 5.40413 5.73999 5.83573 5.94226 6.05340 6.10349 6.18629 6.31802 6.43536 6.55863 6.61868 6.70960 6.76332 7.19948 7.38953 7.76418 8.14964 8.32909 8.67286 9.04803 9.49849 10.31328 10.59453 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.076867 B = 0.008496 C = 0.008110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.176395 B = 3295.009554 C = 3451.902137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.013 4.013 5 C -0.142 4.142 6 C -0.010 4.010 7 N -0.518 5.518 8 C 0.375 3.625 9 C -0.469 4.469 10 H 0.076 0.924 11 C 0.084 3.916 12 N -0.746 5.746 13 Si 0.909 3.091 14 H -0.273 1.273 15 H -0.265 1.265 16 H -0.278 1.278 17 N -0.617 5.617 18 H 0.391 0.609 19 H 0.049 0.951 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.129 0.871 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 3.514 0.707 8.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.052 4.052 5 C -0.254 4.254 6 C -0.164 4.164 7 N -0.240 5.240 8 C 0.130 3.870 9 C -0.509 4.509 10 H 0.094 0.906 11 C -0.139 4.139 12 N -0.371 5.371 13 Si 0.734 3.266 14 H -0.199 1.199 15 H -0.189 1.189 16 H -0.203 1.203 17 N -0.224 5.224 18 H 0.225 0.775 19 H 0.068 0.932 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.360 2.806 0.195 7.879 hybrid contribution -0.059 1.142 0.805 1.398 sum -7.419 3.948 1.000 8.463 Atomic orbital electron populations 1.21859 0.96229 1.01185 1.00992 1.21180 0.94008 0.96552 0.99462 1.21790 1.02179 0.95836 1.00173 1.19671 0.90187 0.99320 0.96033 1.20371 0.90593 1.00265 1.14220 1.21918 0.91791 0.99037 1.03647 1.71223 1.14565 1.15974 1.22202 1.20151 0.83620 0.90194 0.93038 1.18071 0.87887 1.16240 1.28700 0.90617 1.25653 1.00121 0.94223 0.93887 1.69994 1.27760 1.19742 1.19632 0.86316 0.81419 0.78978 0.79902 1.19871 1.18916 1.20269 1.43269 1.07210 1.24330 1.47600 0.77520 0.93225 0.93275 0.92968 0.91182 0.91868 0.93722 0.93696 0.91920 0.93432 0.85312 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 37.15 0.34 -1.44 15 2 C -0.09 -1.44 2.91 -90.62 -0.26 -1.70 15 3 C -0.14 -2.21 9.01 37.16 0.33 -1.88 15 4 C -0.01 -0.23 5.25 -27.88 -0.15 -0.38 15 5 C -0.14 -3.16 5.59 -81.28 -0.45 -3.62 15 6 C -0.01 -0.26 11.77 -17.88 -0.21 -0.47 15 7 N -0.52 -15.24 9.48 -12.72 -0.12 -15.36 15 8 C 0.37 10.52 7.58 -155.59 -1.18 9.34 15 9 C -0.47 -12.96 9.45 -38.17 -0.36 -13.32 15 10 H 0.08 1.93 7.86 -52.49 -0.41 1.52 15 11 C 0.08 2.26 5.49 -17.29 -0.09 2.17 15 12 N -0.75 -21.28 11.96 55.56 0.66 -20.61 15 13 Si 0.91 19.51 29.57 -169.99 -5.03 14.48 15 14 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 15 H -0.27 -5.56 7.11 56.52 0.40 -5.15 15 16 H -0.28 -5.87 7.11 56.52 0.40 -5.46 15 17 N -0.62 -14.52 5.88 -8.20 -0.05 -14.57 15 18 H 0.39 8.01 8.96 -40.82 -0.37 7.64 15 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 15 22 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.06 1.17 7.07 -51.93 -0.37 0.80 15 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 28 H 0.13 2.96 8.06 -52.49 -0.42 2.54 15 29 H 0.27 7.03 8.29 -40.82 -0.34 6.69 15 LS Contribution 249.83 15.07 3.76 3.76 Total: -1.00 -30.94 249.83 -6.88 -37.82 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.08 Total: 5.77 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.03 Total: -11.30 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.50 Total: -50.55 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.94 -6.88 -37.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259136991.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.561 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds