Wall clock time and date at job start Mon Mar 30 2020 02:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.36216 * 125.68710 * 84.71625 * 4 2 1 6 6 N 1.36418 * 107.19193 * 179.90080 * 5 4 2 7 7 C 1.46500 * 126.55635 * 180.13435 * 6 5 4 8 8 C 1.37540 * 106.88551 * 0.35687 * 6 5 4 9 9 C 1.39996 * 125.95804 * 179.73812 * 8 6 5 10 10 H 1.07999 * 120.00755 * 0.02562 * 9 8 6 11 11 C 1.40237 * 119.99985 * 180.02562 * 9 8 6 12 12 N 1.30695 * 119.99904 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00261 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47215 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47313 * 120.00219 * 13 11 9 16 16 H 1.48505 * 109.47130 * 239.99786 * 13 11 9 17 17 N 1.32751 * 125.68921 * 265.02578 * 4 2 1 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 22 22 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.07997 * 126.40242 * 0.02562 * 5 4 2 26 26 H 1.08995 * 109.47153 * 270.27053 * 7 6 5 27 27 H 1.09007 * 109.47070 * 30.26678 * 7 6 5 28 28 H 1.09000 * 109.47413 * 150.26254 * 7 6 5 29 29 H 0.97000 * 120.00321 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.2012 -0.1480 -2.4596 6 7 2.6721 -1.1239 -3.2884 7 6 3.0029 -0.9783 -4.7081 8 6 2.7721 -2.2718 -2.5374 9 6 3.2109 -3.5192 -2.9972 10 1 3.5091 -3.6406 -4.0280 11 6 3.2632 -4.6114 -2.1190 12 7 2.9028 -4.4646 -0.8714 13 14 3.8492 -6.2757 -2.7322 14 1 4.1973 -6.1781 -4.1725 15 1 5.0469 -6.6940 -1.9602 16 1 2.7688 -7.2784 -2.5514 17 7 2.3786 -1.9902 -1.2988 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5139 0.8900 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6768 1.9562 0.8900 25 1 2.0016 0.8791 -2.7273 26 1 2.1196 -1.1900 -5.3105 27 1 3.3381 0.0410 -4.9004 28 1 3.7973 -1.6773 -4.9697 29 1 2.9385 -5.2201 -0.2640 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259495887.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:01 Heat of formation + Delta-G solvation = 40.421841 kcal Electronic energy + Delta-G solvation = -12172.410974 eV Core-core repulsion = 10096.011447 eV Total energy + Delta-G solvation = -2076.399527 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.86488 -34.83177 -33.22926 -31.70162 -28.30629 -26.55151 -25.80589 -24.46460 -21.40621 -19.58041 -17.90857 -16.57646 -15.42696 -14.57330 -14.11490 -13.64212 -13.32839 -12.79242 -12.68012 -12.15925 -11.85762 -11.64599 -11.45062 -11.08050 -11.04430 -10.67696 -10.42152 -10.27138 -9.99717 -9.90408 -9.13770 -7.75154 -7.66977 -6.88623 -6.32637 -4.19067 3.07584 3.19227 3.22765 3.71986 4.07321 4.54486 4.72767 5.61508 5.63102 5.71601 5.79005 6.01870 6.10165 6.19491 6.20669 6.34991 6.37771 6.48731 6.59400 6.75561 6.88313 7.03304 7.27808 7.46989 7.71306 8.17429 8.34070 8.67201 9.04724 9.41863 10.34713 10.60920 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.042993 B = 0.011812 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.106707 B = 2369.944427 C = 2857.857376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 C -0.135 4.135 4 C 0.019 3.981 5 C -0.171 4.171 6 N -0.513 5.513 7 C 0.101 3.899 8 C 0.374 3.626 9 C -0.465 4.465 10 H 0.076 0.924 11 C 0.082 3.918 12 N -0.743 5.743 13 Si 0.909 3.091 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.276 1.276 17 N -0.511 5.511 18 H 0.046 0.954 19 H 0.043 0.957 20 H 0.054 0.946 21 H 0.070 0.930 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.132 0.868 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 4.961 -2.109 5.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 C -0.192 4.192 4 C -0.114 4.114 5 C -0.301 4.301 6 N -0.204 5.204 7 C -0.044 4.044 8 C 0.131 3.869 9 C -0.504 4.504 10 H 0.094 0.906 11 C -0.141 4.141 12 N -0.369 5.369 13 Si 0.733 3.267 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.201 1.201 17 N -0.232 5.232 18 H 0.065 0.935 19 H 0.062 0.938 20 H 0.073 0.927 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.149 0.851 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.921 4.388 -1.378 4.691 hybrid contribution 0.293 -0.098 -1.134 1.175 sum -0.628 4.290 -2.512 5.011 Atomic orbital electron populations 1.21732 0.95808 1.01525 0.99936 1.19190 0.94251 0.93671 0.95563 1.21763 1.00814 0.96361 1.00307 1.20461 1.04995 0.93363 0.92627 1.21504 1.21544 0.94158 0.92865 1.45306 1.56169 1.10624 1.08265 1.21404 1.00286 1.01079 0.81590 1.20241 0.95598 0.86263 0.84817 1.18115 1.44010 0.90991 0.97298 0.90562 1.25677 0.94116 0.99912 0.94386 1.70033 1.32356 1.30869 1.03600 0.86277 0.78808 0.81871 0.79695 1.18865 1.20101 1.20106 1.71155 1.24106 1.11042 1.16903 0.93472 0.93830 0.92688 0.91142 0.93096 0.93195 0.93639 0.85073 0.93474 0.92519 0.91007 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.18 37.16 0.34 -2.08 15 2 C -0.01 -0.15 3.37 -91.77 -0.31 -0.46 15 3 C -0.13 -2.27 8.77 37.15 0.33 -1.95 15 4 C 0.02 0.49 6.00 -82.92 -0.50 -0.01 15 5 C -0.17 -4.09 10.75 -16.24 -0.17 -4.27 15 6 N -0.51 -12.77 3.21 -123.37 -0.40 -13.16 15 7 C 0.10 1.93 10.96 59.85 0.66 2.58 15 8 C 0.37 10.75 7.43 -155.60 -1.16 9.59 15 9 C -0.46 -12.96 9.00 -38.17 -0.34 -13.31 15 10 H 0.08 1.97 7.16 -52.49 -0.38 1.59 15 11 C 0.08 2.22 5.50 -17.28 -0.10 2.12 15 12 N -0.74 -21.23 11.90 55.56 0.66 -20.57 15 13 Si 0.91 19.55 29.56 -169.99 -5.03 14.53 15 14 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 17 N -0.51 -15.13 9.41 -8.95 -0.08 -15.22 15 18 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 19 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 21 H 0.07 1.53 8.14 -51.93 -0.42 1.11 15 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.05 0.80 7.26 -51.93 -0.38 0.42 15 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 15 25 H 0.13 2.73 7.37 -52.49 -0.39 2.34 15 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 27 H 0.06 0.92 8.14 -51.92 -0.42 0.49 15 28 H 0.07 1.32 7.38 -51.93 -0.38 0.94 15 29 H 0.27 7.00 8.29 -40.82 -0.34 6.66 15 LS Contribution 248.94 15.07 3.75 3.75 Total: -1.00 -32.09 248.94 -6.39 -38.47 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.04 Total: -0.03 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.25 Total: -7.77 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.18 Total: -48.95 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.09 -6.39 -38.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259495887.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.892 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds