Wall clock time and date at job start Mon Mar 30 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.36216 * 125.68710 * 84.71625 * 4 2 1 6 6 N 1.36418 * 107.19193 * 179.90080 * 5 4 2 7 7 C 1.46500 * 126.55635 * 180.13435 * 6 5 4 8 8 C 1.37540 * 106.88551 * 0.35687 * 6 5 4 9 9 C 1.39996 * 125.95804 * 179.73812 * 8 6 5 10 10 H 1.07999 * 120.00755 * 0.02562 * 9 8 6 11 11 C 1.40237 * 119.99985 * 180.02562 * 9 8 6 12 12 N 1.30695 * 119.99904 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00261 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47215 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47313 * 120.00219 * 13 11 9 16 16 H 1.48505 * 109.47130 * 239.99786 * 13 11 9 17 17 N 1.32751 * 125.68921 * 265.02578 * 4 2 1 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 22 22 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.07997 * 126.40242 * 0.02562 * 5 4 2 26 26 H 1.08995 * 109.47153 * 270.27053 * 7 6 5 27 27 H 1.09007 * 109.47070 * 30.26678 * 7 6 5 28 28 H 1.09000 * 109.47413 * 150.26254 * 7 6 5 29 29 H 0.97000 * 120.00321 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.2012 -0.1480 -2.4596 6 7 2.6721 -1.1239 -3.2884 7 6 3.0029 -0.9783 -4.7081 8 6 2.7721 -2.2718 -2.5374 9 6 3.2109 -3.5192 -2.9972 10 1 3.5091 -3.6406 -4.0280 11 6 3.2632 -4.6114 -2.1190 12 7 2.9028 -4.4646 -0.8714 13 14 3.8492 -6.2757 -2.7322 14 1 4.1973 -6.1781 -4.1725 15 1 5.0469 -6.6940 -1.9602 16 1 2.7688 -7.2784 -2.5514 17 7 2.3786 -1.9902 -1.2988 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5139 0.8900 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6768 1.9562 0.8900 25 1 2.0016 0.8791 -2.7273 26 1 2.1196 -1.1900 -5.3105 27 1 3.3381 0.0410 -4.9004 28 1 3.7973 -1.6773 -4.9697 29 1 2.9385 -5.2201 -0.2640 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259495887.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:00 Heat of formation + Delta-G solvation = 20.559545 kcal Electronic energy + Delta-G solvation = -12173.272268 eV Core-core repulsion = 10096.011447 eV Total energy + Delta-G solvation = -2077.260821 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.79135 -36.45843 -35.20599 -33.50659 -30.28624 -28.02842 -27.50411 -26.34433 -23.08907 -21.54500 -19.72296 -18.54948 -17.27503 -16.35750 -15.88676 -15.28066 -14.95101 -14.53221 -14.30285 -13.82814 -13.47753 -13.23878 -12.95425 -12.77420 -12.72276 -12.48862 -11.95967 -11.92049 -11.68911 -11.57907 -11.07987 -9.71252 -9.68098 -8.86581 -8.30720 -6.24729 1.35968 1.43000 1.58996 1.84755 2.27449 2.76606 2.77697 3.63180 4.06434 4.21546 4.34363 4.51252 4.58735 4.64720 4.72553 4.77825 4.90197 5.05132 5.09781 5.15864 5.28265 5.35712 5.54968 5.66399 5.77570 6.22226 6.35562 6.76728 7.05211 7.44490 8.37258 8.65972 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.042993 B = 0.011812 C = 0.009795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.106707 B = 2369.944427 C = 2857.857376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.011 4.011 3 C -0.123 4.123 4 C -0.015 4.015 5 C -0.158 4.158 6 N -0.519 5.519 7 C 0.094 3.906 8 C 0.334 3.666 9 C -0.494 4.494 10 H 0.087 0.913 11 C 0.030 3.970 12 N -0.794 5.794 13 Si 0.994 3.006 14 H -0.252 1.252 15 H -0.270 1.270 16 H -0.270 1.270 17 N -0.559 5.559 18 H 0.055 0.945 19 H 0.078 0.922 20 H 0.023 0.977 21 H 0.046 0.954 22 H 0.039 0.961 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.169 0.831 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 5.962 -3.208 6.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.030 4.030 3 C -0.181 4.181 4 C -0.148 4.148 5 C -0.288 4.288 6 N -0.208 5.208 7 C -0.049 4.049 8 C 0.089 3.911 9 C -0.534 4.534 10 H 0.105 0.895 11 C -0.188 4.188 12 N -0.420 5.420 13 Si 0.814 3.186 14 H -0.175 1.175 15 H -0.195 1.195 16 H -0.195 1.195 17 N -0.281 5.281 18 H 0.074 0.926 19 H 0.097 0.903 20 H 0.043 0.957 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.186 0.814 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.935 5.427 -2.508 6.051 hybrid contribution 0.265 -0.273 -0.813 0.898 sum -0.671 5.153 -3.321 6.168 Atomic orbital electron populations 1.21646 0.94062 1.00215 1.02100 1.19336 0.95712 0.95359 0.92641 1.21668 1.00086 0.93802 1.02522 1.21276 1.05742 0.92625 0.95153 1.22097 1.19175 0.95275 0.92262 1.45631 1.55171 1.09718 1.10266 1.21721 1.01194 1.03308 0.78676 1.20605 0.97106 0.87785 0.85650 1.18553 1.45012 0.91674 0.98152 0.89467 1.26763 0.93632 1.04164 0.94261 1.70184 1.34127 1.32444 1.05273 0.85002 0.78201 0.75815 0.79546 1.17480 1.19502 1.19539 1.71053 1.25149 1.13565 1.18327 0.92564 0.90277 0.95730 0.93562 0.94159 0.91859 0.90484 0.81424 0.91880 0.89113 0.90861 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 9.18 71.98 0.66 -3.68 15 2 C -0.01 -0.44 3.37 -11.54 -0.04 -0.48 15 3 C -0.12 -3.85 8.77 71.98 0.63 -3.22 15 4 C -0.02 -0.78 6.00 41.95 0.25 -0.53 15 5 C -0.16 -7.35 10.75 83.51 0.90 -6.45 15 6 N -0.52 -25.41 3.21 -544.22 -1.75 -27.16 15 7 C 0.09 3.38 10.96 127.77 1.40 4.78 15 8 C 0.33 19.58 7.43 133.59 0.99 20.57 15 9 C -0.49 -28.11 9.00 23.18 0.21 -27.90 15 10 H 0.09 4.53 7.16 -2.91 -0.02 4.50 15 11 C 0.03 1.66 5.50 85.35 0.47 2.13 15 12 N -0.79 -47.05 11.90 21.88 0.26 -46.79 15 13 Si 0.99 40.61 29.56 68.60 2.03 42.64 15 14 H -0.25 -9.60 7.11 99.48 0.71 -8.89 15 15 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 16 H -0.27 -10.69 7.11 99.48 0.71 -9.99 15 17 N -0.56 -34.19 9.41 -182.22 -1.71 -35.90 15 18 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15 19 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 20 H 0.02 0.98 8.14 -2.38 -0.02 0.96 15 21 H 0.05 2.06 8.14 -2.39 -0.02 2.05 15 22 H 0.04 1.32 8.14 -2.39 -0.02 1.30 15 23 H 0.06 1.80 7.26 -2.39 -0.02 1.78 15 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 25 H 0.17 6.39 7.37 -2.91 -0.02 6.36 15 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 27 H 0.09 2.63 8.14 -2.38 -0.02 2.61 15 28 H 0.07 2.60 7.38 -2.39 -0.02 2.58 15 29 H 0.27 14.75 8.29 -92.71 -0.77 13.98 15 Total: -1.00 -72.15 248.94 5.42 -66.73 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.12 Total: 15.27 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 5.47 Total: -14.79 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -3.20 Total: -109.84 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -72.15 5.42 -66.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259495887.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.292 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds