Wall clock time and date at job start Mon Mar 30 2020 02:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48494 * 109.47073 * 269.99818 * 3 2 1 5 5 H 1.48504 * 109.47122 * 29.99965 * 3 2 1 6 6 H 1.48504 * 109.47458 * 149.99776 * 3 2 1 7 7 C 1.37875 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00298 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99791 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.34442 * 5.28179 * 9 7 2 11 11 C 1.54541 * 109.40897 * 125.10175 * 9 7 2 12 12 C 1.46473 * 110.60383 * 193.44364 * 11 9 7 13 13 C 1.52891 * 114.14507 * 297.21077 * 12 11 9 14 14 C 1.50729 * 108.70346 * 85.76570 * 13 12 11 15 15 C 1.54024 * 110.53953 * 265.30876 * 14 13 12 16 16 C 1.51143 * 109.40526 * 245.47642 * 9 7 2 17 17 C 1.53619 * 117.50295 * 294.98591 * 16 9 7 18 18 C 1.52893 * 60.15758 * 107.37080 * 17 16 9 19 19 H 0.96998 * 119.99927 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.24837 * 73.15123 * 11 9 7 21 21 H 1.08996 * 109.24661 * 313.73165 * 11 9 7 22 22 H 1.09001 * 108.55131 * 58.41975 * 12 11 9 23 23 H 1.09002 * 108.54943 * 176.00877 * 12 11 9 24 24 H 1.09002 * 109.60167 * 205.52983 * 13 12 11 25 25 H 1.08999 * 109.59885 * 325.84412 * 13 12 11 26 26 H 1.09000 * 109.25999 * 25.57653 * 14 13 12 27 27 H 1.08998 * 109.26993 * 145.06737 * 14 13 12 28 28 H 1.08998 * 108.96739 * 161.16490 * 15 14 13 29 29 H 1.09002 * 108.96148 * 279.92783 * 15 14 13 30 30 H 1.08997 * 117.48123 * 214.90785 * 17 16 9 31 31 H 1.09001 * 117.48010 * 359.83442 * 17 16 9 32 32 H 1.08991 * 117.48128 * 252.46246 * 18 17 16 33 33 H 1.09000 * 117.48166 * 107.53167 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.1837 -2.2998 -0.0946 11 6 1.7206 -3.3633 -1.1916 12 6 0.8018 -4.4828 -1.4102 13 6 0.7229 -5.4646 -0.2408 14 6 -0.2937 -4.9564 0.7492 15 6 0.3938 -4.1362 1.8569 16 6 1.5119 -3.2296 1.2978 17 6 2.9477 -3.7039 1.5685 18 6 2.3776 -2.5198 2.3498 19 1 -0.4850 0.8400 -0.0004 20 1 2.7174 -3.7518 -0.9831 21 1 1.7563 -2.7470 -2.0899 22 1 -0.1951 -4.0824 -1.5946 23 1 1.1231 -5.0268 -2.2985 24 1 0.4185 -6.4453 -0.6066 25 1 1.6984 -5.5402 0.2396 26 1 -1.0163 -4.3260 0.2310 27 1 -0.8124 -5.8031 1.1988 28 1 -0.3520 -3.5144 2.3520 29 1 0.8260 -4.8200 2.5875 30 1 3.0741 -4.6453 2.1032 31 1 3.6997 -3.4902 0.8089 32 1 2.7544 -1.5270 2.1043 33 1 2.1287 -2.6820 3.3985 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:59 Heat of formation + Delta-G solvation = -1.251342 kcal Electronic energy + Delta-G solvation = -13018.036814 eV Core-core repulsion = 11043.370546 eV Total energy + Delta-G solvation = -1974.666268 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.71895 -34.49169 -32.90616 -31.14785 -28.00417 -25.51133 -22.68632 -22.04974 -21.23894 -19.26035 -17.31912 -16.14067 -14.89926 -14.45328 -14.22223 -13.57662 -13.05654 -12.63008 -12.35111 -12.15633 -11.63185 -11.02991 -10.94269 -10.77425 -10.52857 -10.38130 -10.26116 -10.01425 -9.78950 -9.52444 -9.23802 -8.88827 -8.58439 -8.40884 -8.08048 -5.95132 -3.94968 3.32475 3.39750 3.42479 4.47296 4.92674 5.34860 5.44829 5.55599 5.61626 5.90820 6.01207 6.07552 6.23633 6.26893 6.38654 6.41427 6.45983 6.58517 6.70760 6.80471 6.88260 6.94057 7.01651 7.08555 7.15925 7.23649 7.43061 7.50797 7.88566 7.89769 8.06390 8.56984 9.15909 9.65532 11.14324 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.042524 B = 0.013482 C = 0.012405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.290185 B = 2076.370582 C = 2256.596268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.050 0.950 9 C 0.066 3.934 10 H 0.072 0.928 11 C -0.108 4.108 12 C -0.109 4.109 13 C -0.113 4.113 14 C -0.112 4.112 15 C -0.080 4.080 16 C -0.083 4.083 17 C -0.193 4.193 18 C -0.168 4.168 19 H 0.259 0.741 20 H 0.039 0.961 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.034 0.966 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -7.384 1.218 7.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.136 4.136 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.047 3.953 10 H 0.091 0.909 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.118 4.118 16 C -0.084 4.084 17 C -0.230 4.230 18 C -0.205 4.205 19 H 0.069 0.931 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.015 -7.253 1.222 7.425 hybrid contribution 0.513 0.962 0.086 1.094 sum 1.528 -6.291 1.308 6.605 Atomic orbital electron populations 1.69891 1.05858 1.26317 1.51235 1.24927 0.94779 0.98884 0.95011 0.86732 0.79979 0.84053 0.78044 1.20797 1.21345 1.19933 1.21031 0.92672 0.90572 1.49601 0.93127 1.18365 0.99811 0.90905 0.86225 0.90946 1.20762 0.97449 0.95691 1.00712 1.20464 1.00879 0.96915 0.96438 1.21114 1.00015 0.97110 0.96770 1.21353 0.98056 0.98374 0.97133 1.21566 0.97263 0.96477 0.96461 1.22013 0.88532 0.98738 0.99101 1.22995 0.98918 0.97258 1.03844 1.23106 1.05105 0.97873 0.94402 0.93079 0.94206 0.93175 0.92961 0.94763 0.93730 0.91536 0.91847 0.93628 0.92655 0.93937 0.91437 0.89873 0.87370 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 12.61 55.43 0.70 -25.19 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.50 -13.41 5.86 -34.44 -0.20 -13.61 16 8 H 0.05 1.36 7.67 -52.49 -0.40 0.96 16 9 C 0.07 1.59 1.96 -91.89 -0.18 1.41 16 10 H 0.07 1.99 6.65 -51.93 -0.35 1.65 16 11 C -0.11 -2.34 4.80 -29.03 -0.14 -2.48 16 12 C -0.11 -2.04 5.14 -29.90 -0.15 -2.19 16 13 C -0.11 -1.90 5.54 -27.92 -0.15 -2.05 16 14 C -0.11 -1.93 5.58 -27.33 -0.15 -2.08 16 15 C -0.08 -1.52 5.51 -25.45 -0.14 -1.66 16 16 C -0.08 -1.79 1.41 -154.05 -0.22 -2.01 16 17 C -0.19 -3.80 7.97 -26.47 -0.21 -4.01 16 18 C -0.17 -3.59 9.30 -26.46 -0.25 -3.84 16 19 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 20 H 0.04 0.83 6.60 -51.93 -0.34 0.49 16 21 H 0.05 1.13 8.07 -51.93 -0.42 0.72 16 22 H 0.05 1.01 7.27 -51.93 -0.38 0.63 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.15 6.32 -51.93 -0.33 0.83 16 26 H 0.06 1.17 7.12 -51.93 -0.37 0.80 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.73 7.83 -51.93 -0.41 0.32 16 30 H 0.07 1.19 8.00 -51.93 -0.42 0.77 16 31 H 0.08 1.69 7.28 -51.93 -0.38 1.31 16 32 H 0.11 2.56 6.32 -51.93 -0.33 2.23 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 250.13 15.07 3.77 3.77 Total: -1.00 -27.50 250.13 -7.81 -35.31 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.36 Total: 0.62 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -1.89 Total: -30.82 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.70 Total: -25.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.50 -7.81 -35.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.055 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds