Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48494 * 109.47073 * 269.99818 * 3 2 1 5 5 H 1.48504 * 109.47122 * 29.99965 * 3 2 1 6 6 H 1.48504 * 109.47458 * 149.99776 * 3 2 1 7 7 C 1.37875 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00298 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99791 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.34442 * 5.28179 * 9 7 2 11 11 C 1.54541 * 109.40897 * 125.10175 * 9 7 2 12 12 C 1.46473 * 110.60383 * 193.44364 * 11 9 7 13 13 C 1.52891 * 114.14507 * 297.21077 * 12 11 9 14 14 C 1.50729 * 108.70346 * 85.76570 * 13 12 11 15 15 C 1.54024 * 110.53953 * 265.30876 * 14 13 12 16 16 C 1.51143 * 109.40526 * 245.47642 * 9 7 2 17 17 C 1.53619 * 117.50295 * 294.98591 * 16 9 7 18 18 C 1.52893 * 60.15758 * 107.37080 * 17 16 9 19 19 H 0.96998 * 119.99927 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.24837 * 73.15123 * 11 9 7 21 21 H 1.08996 * 109.24661 * 313.73165 * 11 9 7 22 22 H 1.09001 * 108.55131 * 58.41975 * 12 11 9 23 23 H 1.09002 * 108.54943 * 176.00877 * 12 11 9 24 24 H 1.09002 * 109.60167 * 205.52983 * 13 12 11 25 25 H 1.08999 * 109.59885 * 325.84412 * 13 12 11 26 26 H 1.09000 * 109.25999 * 25.57653 * 14 13 12 27 27 H 1.08998 * 109.26993 * 145.06737 * 14 13 12 28 28 H 1.08998 * 108.96739 * 161.16490 * 15 14 13 29 29 H 1.09002 * 108.96148 * 279.92783 * 15 14 13 30 30 H 1.08997 * 117.48123 * 214.90785 * 17 16 9 31 31 H 1.09001 * 117.48010 * 359.83442 * 17 16 9 32 32 H 1.08991 * 117.48128 * 252.46246 * 18 17 16 33 33 H 1.09000 * 117.48166 * 107.53167 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.1837 -2.2998 -0.0946 11 6 1.7206 -3.3633 -1.1916 12 6 0.8018 -4.4828 -1.4102 13 6 0.7229 -5.4646 -0.2408 14 6 -0.2937 -4.9564 0.7492 15 6 0.3938 -4.1362 1.8569 16 6 1.5119 -3.2296 1.2978 17 6 2.9477 -3.7039 1.5685 18 6 2.3776 -2.5198 2.3498 19 1 -0.4850 0.8400 -0.0004 20 1 2.7174 -3.7518 -0.9831 21 1 1.7563 -2.7470 -2.0899 22 1 -0.1951 -4.0824 -1.5946 23 1 1.1231 -5.0268 -2.2985 24 1 0.4185 -6.4453 -0.6066 25 1 1.6984 -5.5402 0.2396 26 1 -1.0163 -4.3260 0.2310 27 1 -0.8124 -5.8031 1.1988 28 1 -0.3520 -3.5144 2.3520 29 1 0.8260 -4.8200 2.5875 30 1 3.0741 -4.6453 2.1032 31 1 3.6997 -3.4902 0.8089 32 1 2.7544 -1.5270 2.1043 33 1 2.1287 -2.6820 3.3985 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = -14.941483 kcal Electronic energy + Delta-G solvation = -13018.630463 eV Core-core repulsion = 11043.370546 eV Total energy + Delta-G solvation = -1975.259917 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.36056 -36.03585 -34.87368 -32.86991 -29.72996 -27.32564 -24.48876 -23.62138 -22.87209 -20.78341 -19.13918 -18.10931 -16.69130 -16.20731 -15.88194 -15.04618 -14.63195 -14.31757 -14.13064 -13.84812 -13.28794 -12.90829 -12.75867 -12.55732 -12.17031 -12.06311 -11.83104 -11.78603 -11.26056 -11.12894 -10.97652 -10.68693 -10.53127 -10.32620 -9.79997 -8.06807 -6.11132 1.38265 1.39834 1.48824 2.44197 3.20822 3.30664 3.97588 4.09040 4.22801 4.39860 4.42638 4.51832 4.65434 4.72013 4.84426 4.89829 5.00023 5.07431 5.18382 5.28208 5.33717 5.38558 5.44380 5.57180 5.58816 5.67659 5.71005 5.73251 5.75619 6.04501 6.12558 6.53120 7.07296 7.51276 9.02415 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.042524 B = 0.013482 C = 0.012405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.290185 B = 2076.370582 C = 2256.596268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.013 3.987 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.503 4.503 8 H 0.044 0.956 9 C 0.063 3.937 10 H 0.033 0.967 11 C -0.101 4.101 12 C -0.110 4.110 13 C -0.106 4.106 14 C -0.110 4.110 15 C -0.078 4.078 16 C -0.101 4.101 17 C -0.165 4.165 18 C -0.183 4.183 19 H 0.258 0.742 20 H 0.048 0.952 21 H 0.026 0.974 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 -9.245 1.713 9.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.045 3.955 10 H 0.051 0.949 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.144 4.144 14 C -0.148 4.148 15 C -0.115 4.115 16 C -0.101 4.101 17 C -0.202 4.202 18 C -0.220 4.220 19 H 0.067 0.933 20 H 0.066 0.934 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.901 -9.119 1.713 9.471 hybrid contribution 0.266 1.538 -0.082 1.563 sum 2.167 -7.580 1.631 8.051 Atomic orbital electron populations 1.70030 1.07191 1.26797 1.53061 1.25617 0.95486 1.02024 0.95340 0.85813 0.78929 0.80405 0.78081 1.20384 1.21272 1.19268 1.21339 0.92485 0.92064 1.48230 0.93734 1.18273 0.97068 0.91071 0.89136 0.94867 1.20637 0.98635 0.96119 0.98463 1.20417 0.99118 0.96536 0.98642 1.21084 0.99927 0.97760 0.95585 1.21352 0.97846 0.98784 0.96772 1.21554 0.96136 0.96399 0.97412 1.21909 0.90732 0.99721 0.97739 1.22986 0.96873 0.97596 1.02704 1.23051 1.06091 0.97244 0.95610 0.93317 0.93351 0.95489 0.94509 0.92451 0.90587 0.91397 0.94128 0.90466 0.94391 0.91299 0.88159 0.90699 0.90394 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 12.61 21.45 0.27 -55.40 16 2 C 0.01 0.71 5.46 84.65 0.46 1.17 16 3 Si 0.94 44.64 29.54 68.60 2.03 46.67 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.50 -27.52 5.86 25.60 0.15 -27.37 16 8 H 0.04 2.43 7.67 -2.91 -0.02 2.41 16 9 C 0.06 3.12 1.96 -11.62 -0.02 3.10 16 10 H 0.03 1.89 6.65 -2.39 -0.02 1.88 16 11 C -0.10 -4.33 4.80 29.10 0.14 -4.19 16 12 C -0.11 -3.91 5.14 28.54 0.15 -3.77 16 13 C -0.11 -3.22 5.54 29.82 0.17 -3.05 16 14 C -0.11 -3.54 5.58 30.20 0.17 -3.37 16 15 C -0.08 -2.79 5.51 31.42 0.17 -2.62 16 16 C -0.10 -4.23 1.41 -51.89 -0.07 -4.30 16 17 C -0.16 -6.06 7.97 30.77 0.25 -5.81 16 18 C -0.18 -7.66 9.30 30.77 0.29 -7.37 16 19 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 20 H 0.05 1.96 6.60 -2.39 -0.02 1.94 16 21 H 0.03 1.23 8.07 -2.39 -0.02 1.21 16 22 H 0.04 1.41 7.27 -2.39 -0.02 1.39 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.07 6.32 -2.39 -0.02 2.05 16 26 H 0.04 1.48 7.12 -2.39 -0.02 1.46 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 2.11 7.83 -2.39 -0.02 2.09 16 30 H 0.10 3.06 8.00 -2.39 -0.02 3.05 16 31 H 0.07 2.88 7.28 -2.39 -0.02 2.86 16 32 H 0.08 3.72 6.32 -2.39 -0.02 3.71 16 33 H 0.08 3.07 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -59.94 250.13 5.20 -54.75 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.06 Total: 11.56 kcal Atomic # 6 Polarization: -59.41 SS G_CDS: 1.84 Total: -57.57 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.27 Total: -55.40 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -59.94 5.20 -54.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.805 kcal (2) G-P(sol) polarization free energy of solvation -59.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds