Wall clock time and date at job start Mon Mar 30 2020 01:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.50698 * 109.46933 * 294.99806 * 4 2 1 6 6 C 1.34010 * 126.95205 * 265.02363 * 5 4 2 7 7 O 1.34255 * 109.70067 * 179.97438 * 6 5 4 8 8 C 1.33876 * 111.06473 * 359.97438 * 7 6 5 9 9 C 1.38986 * 107.88674 * 359.75053 * 8 7 6 10 10 C 1.41385 * 127.37138 * 180.27825 * 9 8 7 11 11 H 1.07995 * 119.99807 * 180.12568 * 10 9 8 12 12 C 1.39695 * 119.99841 * 0.12612 * 10 9 8 13 13 N 1.31025 * 120.00280 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99787 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47306 * 59.99681 * 14 12 10 16 16 H 1.48500 * 109.47087 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47157 * 299.99854 * 14 12 10 18 18 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 19 19 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 21 21 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 22 22 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 23 23 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 24 24 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 25 25 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 26 26 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 27 27 H 1.07996 * 125.14798 * 359.95769 * 6 5 4 28 28 H 1.07998 * 126.05834 * 180.02562 * 8 7 6 29 29 H 0.96998 * 120.00345 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6414 -2.1732 -1.1890 6 6 2.3815 -3.1935 -0.7340 7 8 1.6877 -4.3381 -0.8393 8 6 0.4749 -4.1192 -1.3622 9 6 0.3569 -2.7570 -1.6114 10 6 -0.7568 -2.0775 -2.1564 11 1 -0.7185 -1.0081 -2.3021 12 6 -1.9065 -2.7895 -2.5064 13 7 -1.9531 -4.0869 -2.3292 14 14 -3.3777 -1.8919 -3.2271 15 1 -2.9766 -1.2161 -4.4872 16 1 -4.4613 -2.8665 -3.5119 17 1 -3.8644 -0.8795 -2.2558 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5139 0.8899 22 1 1.6766 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8899 25 1 1.6054 -0.2616 -2.1370 26 1 3.1264 -0.6442 -1.2952 27 1 3.3842 -3.1081 -0.3421 28 1 -0.2800 -4.8679 -1.5522 29 1 -2.7513 -4.5814 -2.5726 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259781708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:38 Heat of formation + Delta-G solvation = -37.674123 kcal Electronic energy + Delta-G solvation = -12285.165588 eV Core-core repulsion = 10173.086815 eV Total energy + Delta-G solvation = -2112.078773 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.18805 -37.45353 -35.58025 -32.78547 -30.35837 -27.89334 -27.16761 -26.94782 -21.88273 -21.40707 -20.01280 -18.85077 -17.27108 -16.25454 -16.07238 -15.71282 -15.09608 -14.70213 -14.30359 -14.02907 -13.62503 -12.97275 -12.95366 -12.85212 -12.47779 -12.45897 -11.81580 -11.72905 -11.59962 -11.34418 -11.27185 -11.21267 -9.66201 -8.80057 -8.45642 -6.19120 1.34930 1.39239 1.50460 1.59585 2.22088 2.27196 3.10745 3.50427 4.11223 4.21367 4.28076 4.53674 4.71269 4.81534 4.86734 4.93753 5.08643 5.18835 5.20435 5.31737 5.36157 5.51843 5.62823 5.74439 5.78694 5.97563 6.24116 6.59123 6.89074 7.10088 7.37509 8.57035 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.015219 C = 0.010709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.916477 B = 1839.390491 C = 2614.078925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.024 4.024 5 C -0.235 4.235 6 C -0.072 4.072 7 O -0.224 6.224 8 C -0.217 4.217 9 C -0.020 4.020 10 C -0.442 4.442 11 H 0.076 0.924 12 C 0.008 3.992 13 N -0.863 5.863 14 Si 0.984 3.016 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.262 1.262 18 H 0.043 0.957 19 H 0.042 0.958 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.213 0.787 28 H 0.199 0.801 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 7.736 2.414 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.194 4.194 4 C -0.062 4.062 5 C -0.238 4.238 6 C -0.139 4.139 7 O -0.125 6.125 8 C -0.283 4.283 9 C -0.023 4.023 10 C -0.475 4.475 11 H 0.094 0.906 12 C -0.199 4.199 13 N -0.496 5.496 14 Si 0.806 3.194 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.187 1.187 18 H 0.062 0.938 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.230 0.770 28 H 0.216 0.784 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.855 7.300 2.456 8.613 hybrid contribution -0.938 -0.048 -0.443 1.038 sum 2.917 7.252 2.013 8.072 Atomic orbital electron populations 1.21899 0.96178 1.01627 1.00258 1.21042 0.95429 0.96578 0.97249 1.21791 1.01296 0.94416 1.01941 1.19828 0.99732 0.88910 0.97713 1.21784 0.95785 0.96874 1.09337 1.23781 0.98847 0.83775 1.07463 1.83537 1.26681 1.34738 1.67499 1.25367 0.86545 0.99511 1.16894 1.19534 0.93233 0.91680 0.97810 1.19028 0.97036 0.95085 1.36315 0.90612 1.26604 1.02540 0.95475 0.95280 1.69484 1.29797 1.08695 1.41597 0.85201 0.76679 0.78414 0.79109 1.18834 1.19858 1.18699 0.93755 0.93851 0.92884 0.92181 0.91945 0.91524 0.92844 0.93164 0.90452 0.77049 0.78449 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 7.93 71.98 0.57 -4.81 15 2 C -0.08 -2.79 2.91 -10.79 -0.03 -2.83 15 3 C -0.14 -3.42 9.19 71.98 0.66 -2.75 15 4 C -0.02 -0.91 5.16 29.85 0.15 -0.76 15 5 C -0.24 -11.02 5.11 -18.45 -0.09 -11.11 15 6 C -0.07 -3.19 11.92 66.86 0.80 -2.40 15 7 O -0.22 -11.71 10.52 2.03 0.02 -11.69 15 8 C -0.22 -12.46 11.15 68.00 0.76 -11.70 15 9 C -0.02 -1.13 5.22 -19.95 -0.10 -1.23 15 10 C -0.44 -24.37 7.69 23.40 0.18 -24.19 15 11 H 0.08 3.98 6.47 -2.91 -0.02 3.96 15 12 C 0.01 0.42 5.49 85.17 0.47 0.89 15 13 N -0.86 -47.84 10.41 21.79 0.23 -47.62 15 14 Si 0.98 40.89 29.56 68.60 2.03 42.92 15 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 15 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 17 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 18 H 0.04 1.67 7.37 -2.39 -0.02 1.65 15 19 H 0.04 2.00 5.39 -2.39 -0.01 1.99 15 20 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.06 1.38 8.14 -2.39 -0.02 1.37 15 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 15 25 H 0.05 1.97 8.14 -2.38 -0.02 1.95 15 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 27 H 0.21 7.03 8.06 -2.91 -0.02 7.01 15 28 H 0.20 11.87 5.81 -2.91 -0.02 11.86 15 29 H 0.28 14.24 8.30 -92.71 -0.77 13.48 15 Total: -1.00 -61.99 241.97 6.76 -55.23 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 1.13 Total: 22.06 kcal Atomic # 6 Polarization: -64.26 SS G_CDS: 3.36 Total: -60.90 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.23 Total: -47.62 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.02 Total: -11.69 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -61.99 6.76 -55.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259781708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.560 kcal (2) G-P(sol) polarization free energy of solvation -61.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds