Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.52997 * 115.54993 * 179.91634 * 9 7 2 11 11 C 1.52999 * 109.47519 * 85.58074 * 10 9 7 12 12 C 1.52997 * 109.47146 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47141 * 60.00162 * 12 11 10 14 14 C 1.52995 * 109.47454 * 299.99795 * 13 12 11 15 15 C 1.52995 * 109.46932 * 325.58135 * 10 9 7 16 16 C 1.53003 * 117.50023 * 34.20639 * 9 7 2 17 17 C 1.52999 * 117.50063 * 325.58420 * 9 7 2 18 18 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.47358 * 205.58248 * 10 9 7 20 20 H 1.08991 * 109.47311 * 300.00285 * 11 10 9 21 21 H 1.09000 * 109.46883 * 60.00297 * 11 10 9 22 22 H 1.09004 * 109.47523 * 300.00046 * 12 11 10 23 23 H 1.09005 * 109.47005 * 180.02562 * 12 11 10 24 24 H 1.09006 * 109.47488 * 179.97438 * 13 12 11 25 25 H 1.09000 * 109.47234 * 60.00023 * 13 12 11 26 26 H 1.09000 * 109.47086 * 300.00319 * 14 13 12 27 27 H 1.09000 * 109.47368 * 179.97438 * 14 13 12 28 28 H 1.09002 * 109.47528 * 299.99842 * 15 10 9 29 29 H 1.09000 * 109.47234 * 60.00353 * 15 10 9 30 30 H 1.08994 * 117.49976 * 359.97438 * 16 9 7 31 31 H 1.09000 * 117.49896 * 145.02352 * 16 9 7 32 32 H 1.09003 * 117.50192 * 214.98138 * 17 9 7 33 33 H 1.09001 * 117.50178 * 359.97237 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1165 -3.7608 -0.0032 11 6 2.4991 -4.1200 1.4340 12 6 3.3650 -5.3813 1.4312 13 6 4.6334 -5.1273 0.6142 14 6 4.2509 -4.7682 -0.8230 15 6 3.3849 -3.5075 -0.8204 16 6 -0.0745 -2.5496 -0.7630 17 6 -0.0715 -2.5513 0.7670 18 1 -0.4850 0.8401 0.0004 19 1 1.5569 -4.5844 -0.4468 20 1 3.0586 -3.2965 1.8776 21 1 1.5954 -4.3005 2.0162 22 1 2.8059 -6.2050 0.9875 23 1 3.6372 -5.6374 2.4552 24 1 5.2506 -6.0258 0.6126 25 1 5.1926 -4.3036 1.0580 26 1 3.6917 -5.5918 -1.2668 27 1 5.1546 -4.5868 -1.4049 28 1 3.1124 -3.2517 -1.8443 29 1 3.9445 -2.6840 -0.3767 30 1 -0.4018 -1.6387 -1.2642 31 1 -0.3302 -3.4817 -1.2668 32 1 -0.3252 -3.4846 1.2698 33 1 -0.3963 -1.6419 1.2724 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259818018.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = -0.402922 kcal Electronic energy + Delta-G solvation = -12802.425908 eV Core-core repulsion = 10827.796430 eV Total energy + Delta-G solvation = -1974.629478 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 194.137 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.35762 -35.53728 -31.61253 -30.13414 -29.43051 -25.53945 -22.30690 -21.96745 -20.37223 -19.19935 -18.69069 -15.78749 -15.16906 -14.41043 -13.67734 -13.49844 -13.28563 -13.06061 -12.10035 -11.77821 -11.53645 -11.03332 -10.99977 -10.86533 -10.61952 -10.53418 -10.19073 -9.95213 -9.87522 -9.60389 -9.44055 -8.94455 -8.63664 -8.11708 -7.90790 -5.88947 -3.93945 3.32105 3.37186 3.39457 4.43545 5.14282 5.27187 5.36996 5.38194 5.82655 5.92263 6.05376 6.11871 6.14180 6.16989 6.25281 6.37904 6.53349 6.63667 6.68524 6.70719 6.87401 6.92359 7.05748 7.09429 7.25041 7.29207 7.46027 7.51247 7.79544 8.11990 8.33503 8.60063 9.03453 9.60714 11.06665 Molecular weight = 194.14amu Principal moments of inertia in cm(-1) A = 0.040541 B = 0.012596 C = 0.010934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.492050 B = 2222.367818 C = 2560.192258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.471 4.471 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.040 4.040 11 C -0.105 4.105 12 C -0.119 4.119 13 C -0.116 4.116 14 C -0.122 4.122 15 C -0.102 4.102 16 C -0.193 4.193 17 C -0.190 4.190 18 H 0.257 0.743 19 H 0.043 0.957 20 H 0.063 0.937 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.526 -7.003 0.652 8.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.508 4.508 8 H 0.082 0.918 9 C 0.025 3.975 10 C -0.059 4.059 11 C -0.143 4.143 12 C -0.156 4.156 13 C -0.153 4.153 14 C -0.159 4.159 15 C -0.139 4.139 16 C -0.231 4.231 17 C -0.228 4.228 18 H 0.068 0.932 19 H 0.061 0.939 20 H 0.082 0.918 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.375 -6.856 0.651 8.736 hybrid contribution 0.244 0.895 -0.007 0.928 sum 5.619 -5.960 0.644 8.216 Atomic orbital electron populations 1.70029 1.05752 1.25851 1.50226 1.25040 0.94929 0.99109 0.95375 0.86662 0.79562 0.83233 0.78559 1.21411 1.20336 1.20323 1.20686 0.92677 0.88851 1.48578 0.91831 1.18974 0.85705 0.92441 1.00410 1.20560 0.95190 0.96315 0.93809 1.21484 0.98651 0.96222 0.97929 1.21574 0.96585 0.98729 0.98758 1.21500 0.97298 1.00263 0.96273 1.21613 0.99299 0.99059 0.95939 1.21492 0.96059 0.96084 1.00283 1.22853 1.06385 0.99382 0.94443 1.22755 1.06415 0.99327 0.94255 0.93230 0.93877 0.91786 0.92772 0.92880 0.93089 0.93304 0.92234 0.92961 0.93059 0.92523 0.91160 0.87544 0.94352 0.94271 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.78 8.59 55.43 0.48 -24.30 16 2 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.47 -12.66 8.51 -34.44 -0.29 -12.95 16 8 H 0.06 1.67 5.86 -52.49 -0.31 1.36 16 9 C 0.03 0.62 1.86 -155.66 -0.29 0.33 16 10 C -0.04 -0.84 2.25 -90.62 -0.20 -1.04 16 11 C -0.11 -1.98 5.05 -26.73 -0.13 -2.12 16 12 C -0.12 -1.83 5.92 -26.74 -0.16 -1.99 16 13 C -0.12 -1.69 5.92 -26.74 -0.16 -1.85 16 14 C -0.12 -1.90 5.92 -26.76 -0.16 -2.06 16 15 C -0.10 -1.96 4.58 -26.76 -0.12 -2.08 16 16 C -0.19 -4.94 9.31 -26.73 -0.25 -5.19 16 17 C -0.19 -4.82 8.86 -26.73 -0.24 -5.06 16 18 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 19 H 0.04 0.89 7.90 -51.93 -0.41 0.48 16 20 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 21 H 0.05 1.03 7.29 -51.93 -0.38 0.66 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 1.44 6.19 -51.93 -0.32 1.12 16 30 H 0.11 2.99 6.27 -51.93 -0.33 2.66 16 31 H 0.04 0.90 8.05 -51.93 -0.42 0.49 16 32 H 0.04 0.91 7.61 -51.93 -0.40 0.52 16 33 H 0.11 2.95 6.29 -51.93 -0.33 2.63 16 LS Contribution 251.82 15.07 3.79 3.79 Total: -1.00 -27.28 251.82 -8.25 -35.53 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.40 Total: 1.40 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -2.10 Total: -32.56 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.48 Total: -24.30 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.28 -8.25 -35.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259818018.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.129 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds