Wall clock time and date at job start Mon Mar 30 2020 02:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47202 * 2 1 4 4 H 1.09000 * 109.47008 * 305.63505 * 3 2 1 5 5 C 1.50701 * 109.46614 * 185.63369 * 3 2 1 6 6 H 1.07996 * 119.99970 * 275.26674 * 5 3 2 7 7 C 1.37877 * 119.99975 * 95.27668 * 5 3 2 8 8 N 1.31511 * 119.99868 * 182.78194 * 7 5 3 9 9 Si 1.86801 * 119.99959 * 2.78277 * 7 5 3 10 10 H 1.48498 * 109.46958 * 85.07955 * 9 7 5 11 11 H 1.48501 * 109.47192 * 205.07850 * 9 7 5 12 12 H 1.48500 * 109.47257 * 325.07973 * 9 7 5 13 13 C 1.50696 * 109.46825 * 65.63571 * 3 2 1 14 14 N 1.30499 * 125.65185 * 60.02205 * 13 3 2 15 15 C 1.34129 * 109.25697 * 179.97438 * 14 13 3 16 16 C 1.34669 * 108.01967 * 0.02562 * 15 14 13 17 17 N 1.35041 * 125.64947 * 239.71571 * 13 3 2 18 18 C 1.46505 * 126.39521 * 0.02562 * 17 13 3 19 19 H 1.09005 * 109.46821 * 299.99894 * 1 2 3 20 20 H 1.08998 * 109.47277 * 59.99670 * 1 2 3 21 21 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46821 * 240.00106 * 2 1 3 23 23 H 1.08998 * 109.47277 * 120.00330 * 2 1 3 24 24 H 0.97006 * 119.99888 * 179.97438 * 8 7 5 25 25 H 1.08000 * 125.99009 * 180.02562 * 15 14 13 26 26 H 1.08001 * 126.59480 * 180.02562 * 16 15 14 27 27 H 1.09003 * 109.46766 * 90.00090 * 18 17 13 28 28 H 1.08997 * 109.47284 * 209.99569 * 18 17 13 29 29 H 1.08998 * 109.47126 * 330.00171 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5406 1.4447 -0.1395 6 1 4.1643 1.3291 0.7346 7 6 4.1171 1.5943 -1.3829 8 7 5.4248 1.5414 -1.5121 9 14 3.0408 1.8722 -2.8842 10 1 2.7333 3.3194 -3.0117 11 1 3.7575 1.4095 -4.0997 12 1 1.7759 1.1087 -2.7346 13 6 1.6548 2.1114 1.2943 14 7 2.0141 1.7234 2.4873 15 6 1.4880 2.5540 3.3997 16 6 0.7752 3.4920 2.7473 17 7 0.8855 3.2151 1.4113 18 6 0.2789 3.9723 0.3136 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 5.8304 1.6463 -2.3870 25 1 1.6139 2.4830 4.4700 26 1 0.2264 4.3088 3.1922 27 1 -0.7106 3.5692 0.0975 28 1 0.1896 5.0200 0.6007 29 1 0.9062 3.8909 -0.5741 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259879246.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:32 Heat of formation + Delta-G solvation = 49.589919 kcal Electronic energy + Delta-G solvation = -12434.805095 eV Core-core repulsion = 10358.803126 eV Total energy + Delta-G solvation = -2076.001969 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.30331 -35.01460 -33.31867 -32.02173 -29.18812 -27.21716 -26.36204 -22.99561 -21.37826 -20.47926 -18.39453 -16.92599 -16.37902 -15.16498 -14.40135 -14.13393 -13.37741 -12.97500 -12.79928 -12.66457 -12.28925 -12.26859 -11.89743 -11.61863 -10.94607 -10.58988 -10.29517 -9.85110 -9.80780 -9.24436 -9.01581 -8.87100 -8.60142 -7.51371 -6.10031 -4.09195 2.79911 3.18405 3.28741 3.30323 3.47844 4.03719 4.34489 5.11865 5.15606 5.41455 5.44663 5.56765 5.69129 5.88180 5.94567 6.07552 6.12354 6.27099 6.54540 6.61264 6.87141 6.99714 7.10766 7.32630 7.51459 7.66227 7.96463 8.51968 9.04018 9.05468 9.49281 11.03175 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.035855 B = 0.014218 C = 0.013815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.738372 B = 1968.865499 C = 2026.294321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.094 3.906 4 H 0.039 0.961 5 C -0.499 4.499 6 H 0.085 0.915 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.866 3.134 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.271 3.729 14 N -0.495 5.495 15 C -0.033 4.033 16 C -0.095 4.095 17 N -0.471 5.471 18 C 0.074 3.926 19 H 0.043 0.957 20 H 0.041 0.959 21 H 0.043 0.957 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.265 0.735 25 H 0.158 0.842 26 H 0.161 0.839 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.582 3.708 1.872 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C 0.073 3.927 4 H 0.057 0.943 5 C -0.537 4.537 6 H 0.103 0.897 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.692 3.308 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.008 3.992 14 N -0.213 5.213 15 C -0.181 4.181 16 C -0.227 4.227 17 N -0.154 5.154 18 C -0.069 4.069 19 H 0.062 0.938 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.175 0.825 26 H 0.178 0.822 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.995 3.142 1.817 11.579 hybrid contribution -1.001 1.148 -0.943 1.791 sum -11.996 4.290 0.874 12.770 Atomic orbital electron populations 1.21883 0.98553 1.00214 1.00254 1.21754 0.92423 0.98395 1.02218 1.17847 0.97826 0.91534 0.85473 0.94333 1.20892 0.87914 1.49477 0.95462 0.89706 1.25037 0.94833 0.94781 0.98359 1.69882 1.09385 1.49811 1.24090 0.87038 0.81544 0.78888 0.83293 1.20258 1.21074 1.18545 1.24199 0.91416 0.86354 0.97261 1.70279 1.24198 1.28537 0.98261 1.22202 1.01388 0.95435 0.99100 1.22366 1.11187 1.05737 0.83404 1.45415 1.39832 1.23874 1.06278 1.21913 0.98769 0.96106 0.90119 0.93800 0.93987 0.93748 0.92054 0.91453 0.92508 0.82469 0.82184 0.91315 0.90364 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.73 37.16 0.36 -2.37 15 2 C -0.11 -2.37 5.37 -26.73 -0.14 -2.52 15 3 C 0.09 2.24 1.73 -92.92 -0.16 2.07 15 4 H 0.04 0.88 3.95 -51.93 -0.21 0.67 15 5 C -0.50 -14.16 8.84 -34.44 -0.30 -14.47 15 6 H 0.08 2.74 8.06 -52.49 -0.42 2.31 15 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 8 N -0.89 -27.16 13.96 55.43 0.77 -26.39 15 9 Si 0.87 20.45 26.94 -169.99 -4.58 15.87 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 12 H -0.26 -5.78 6.88 56.52 0.39 -5.39 15 13 C 0.27 6.15 5.40 -155.42 -0.84 5.31 15 14 N -0.50 -11.67 11.25 -10.82 -0.12 -11.79 15 15 C -0.03 -0.64 11.87 -17.81 -0.21 -0.85 15 16 C -0.10 -1.65 11.58 -16.56 -0.19 -1.84 15 17 N -0.47 -8.93 3.15 -121.28 -0.38 -9.31 15 18 C 0.07 1.08 10.83 59.85 0.65 1.73 15 19 H 0.04 0.80 7.40 -51.93 -0.38 0.42 15 20 H 0.04 0.71 8.14 -51.93 -0.42 0.28 15 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.06 1.34 8.14 -51.93 -0.42 0.92 15 23 H 0.07 1.53 8.14 -51.93 -0.42 1.11 15 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 25 H 0.16 2.52 8.06 -52.49 -0.42 2.10 15 26 H 0.16 2.08 8.06 -52.49 -0.42 1.66 15 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 29 H 0.09 1.35 7.05 -51.93 -0.37 0.99 15 LS Contribution 246.96 15.07 3.72 3.72 Total: -1.00 -32.28 246.96 -5.44 -37.72 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -3.91 Total: 1.16 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.94 Total: -10.99 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.27 Total: -47.49 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.58 Total: 15.87 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.28 -5.44 -37.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879246.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.311 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds