Wall clock time and date at job start Mon Mar 30 2020 02:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47319 * 2 1 4 4 N 1.46893 * 109.46965 * 239.99473 * 2 1 3 5 5 C 1.50700 * 109.46838 * 119.99484 * 2 1 3 6 6 C 1.39267 * 126.03669 * 76.02684 * 5 2 1 7 7 C 1.41348 * 127.11374 * 0.03210 * 6 5 2 8 8 H 1.08004 * 119.99687 * 342.15401 * 7 6 5 9 9 C 1.39673 * 120.00571 * 162.14937 * 7 6 5 10 10 N 1.31059 * 119.99469 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00527 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46995 * 59.99889 * 11 9 7 13 13 H 1.48492 * 109.47286 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46583 * 300.00122 * 11 9 7 15 15 C 1.46971 * 105.77979 * 180.02562 * 6 5 2 16 16 C 1.34327 * 106.48681 * 359.97438 * 15 6 5 17 17 N 1.34918 * 126.03987 * 256.04062 * 5 2 1 18 18 C 1.46498 * 124.78760 * 0.02562 * 17 5 2 19 19 H 1.09000 * 109.46838 * 300.00129 * 1 2 3 20 20 H 1.08994 * 109.46712 * 60.00295 * 1 2 3 21 21 H 1.09001 * 109.46944 * 180.02562 * 1 2 3 22 22 H 1.00903 * 111.00241 * 306.60030 * 4 2 1 23 23 H 1.00903 * 111.00385 * 70.55888 * 4 2 1 24 24 H 0.97004 * 119.99253 * 179.97438 * 10 9 7 25 25 H 1.08004 * 126.76042 * 180.26009 * 15 6 5 26 26 H 1.08001 * 125.30631 * 180.02562 * 16 15 6 27 27 H 1.08993 * 109.47330 * 267.63943 * 18 17 5 28 28 H 1.09007 * 109.47206 * 27.64262 * 18 17 5 29 29 H 1.09004 * 109.46905 * 147.63581 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1993 5 6 2.0323 -0.7103 1.2305 6 6 2.0490 -2.0883 1.4317 7 6 1.6050 -3.0866 0.5349 8 1 0.9481 -2.8254 -0.2816 9 6 2.0159 -4.4107 0.7046 10 7 2.8135 -4.7274 1.6951 11 14 1.4297 -5.7299 -0.4810 12 1 1.8723 -5.3905 -1.8573 13 1 2.0031 -7.0412 -0.0853 14 1 -0.0528 -5.8065 -0.4426 15 6 2.6238 -2.2900 2.7692 16 6 2.8997 -1.0679 3.2538 17 7 2.5450 -0.1237 2.3320 18 6 2.6989 1.3218 2.5144 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.6107 -1.6116 -1.2785 23 1 1.8446 -0.1461 -2.0293 24 1 3.0985 -5.6471 1.8132 25 1 2.7953 -3.2350 3.2632 26 1 3.3342 -0.8636 4.2212 27 1 3.6929 1.6256 2.1864 28 1 1.9460 1.8446 1.9244 29 1 2.5720 1.5706 3.5680 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925107.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:25 Heat of formation + Delta-G solvation = 43.907483 kcal Electronic energy + Delta-G solvation = -12399.774148 eV Core-core repulsion = 10323.525770 eV Total energy + Delta-G solvation = -2076.248378 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.23238 -34.82091 -33.33285 -30.83841 -28.12545 -27.34732 -25.93018 -23.76987 -21.34890 -19.12342 -17.67180 -16.67386 -15.24852 -14.74037 -14.28128 -14.09041 -13.20759 -12.80549 -12.49394 -12.30811 -12.08522 -11.31348 -11.16187 -11.02207 -10.90172 -10.81171 -10.70718 -10.48495 -9.72639 -9.16327 -8.84188 -7.77055 -6.77737 -6.51410 -6.18252 -3.75416 3.20508 3.28677 3.30917 3.79941 4.26494 4.45163 4.61149 5.50269 5.58738 5.72598 5.83665 5.87721 5.95785 6.07191 6.17080 6.31365 6.45032 6.70089 6.85745 7.50763 7.52353 7.79402 8.05222 8.13085 8.44519 8.47498 8.68430 9.06926 9.11946 9.46275 9.48191 10.80114 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.037911 B = 0.014644 C = 0.011308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.390063 B = 1911.556855 C = 2475.571184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.194 3.806 3 H 0.051 0.949 4 N -0.838 5.838 5 C -0.134 4.134 6 C 0.061 3.939 7 C -0.435 4.435 8 H 0.062 0.938 9 C 0.070 3.930 10 N -0.831 5.831 11 Si 0.900 3.100 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.273 1.273 15 C -0.192 4.192 16 C -0.056 4.056 17 N -0.461 5.461 18 C 0.088 3.912 19 H 0.048 0.952 20 H 0.036 0.964 21 H 0.064 0.936 22 H 0.356 0.644 23 H 0.317 0.683 24 H 0.267 0.733 25 H 0.141 0.859 26 H 0.128 0.872 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 6.674 -1.149 7.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.082 3.918 3 H 0.069 0.931 4 N -0.371 5.371 5 C -0.240 4.240 6 C 0.054 3.946 7 C -0.469 4.469 8 H 0.080 0.920 9 C -0.141 4.141 10 N -0.461 5.461 11 Si 0.727 3.273 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.198 1.198 15 C -0.220 4.220 16 C -0.182 4.182 17 N -0.144 5.144 18 C -0.055 4.055 19 H 0.067 0.933 20 H 0.055 0.945 21 H 0.083 0.917 22 H 0.174 0.826 23 H 0.128 0.872 24 H 0.077 0.923 25 H 0.159 0.841 26 H 0.145 0.855 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.548 6.862 -0.704 7.069 hybrid contribution -1.132 -0.582 -0.721 1.463 sum -2.680 6.280 -1.425 6.975 Atomic orbital electron populations 1.22635 0.99022 1.02340 0.99705 1.19034 0.90146 0.94476 0.88175 0.93059 1.58860 1.67514 1.07680 1.03001 1.19725 1.20896 0.92630 0.90749 1.18122 0.95652 0.88733 0.92060 1.18463 1.26692 0.91198 1.10583 0.92034 1.25606 0.94080 0.99099 0.95323 1.69836 1.29177 1.18944 1.28168 0.86524 0.79247 0.80155 0.81386 1.19593 1.20942 1.19832 1.22321 1.07975 0.94969 0.96759 1.21259 1.12223 0.89340 0.95410 1.42570 1.53445 1.03426 1.15007 1.21541 1.00818 0.82122 1.01048 0.93327 0.94473 0.91731 0.82562 0.87245 0.92258 0.84138 0.85460 0.93469 0.91859 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 9.41 37.16 0.35 -2.91 15 2 C 0.19 3.99 3.44 -68.87 -0.24 3.75 15 3 H 0.05 0.98 6.96 -51.93 -0.36 0.62 15 4 N -0.84 -17.07 9.07 -5.66 -0.05 -17.12 15 5 C -0.13 -3.29 5.95 -80.85 -0.48 -3.77 15 6 C 0.06 1.70 5.95 -104.80 -0.62 1.07 15 7 C -0.43 -11.97 8.13 -37.86 -0.31 -12.28 15 8 H 0.06 1.60 5.41 -52.48 -0.28 1.32 15 9 C 0.07 1.90 5.48 -17.35 -0.10 1.80 15 10 N -0.83 -23.25 10.75 55.53 0.60 -22.65 15 11 Si 0.90 20.25 29.56 -169.99 -5.02 15.22 15 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 15 C -0.19 -5.23 9.83 -37.43 -0.37 -5.60 15 16 C -0.06 -1.33 11.30 -16.79 -0.19 -1.52 15 17 N -0.46 -10.43 3.10 -119.08 -0.37 -10.80 15 18 C 0.09 1.49 10.65 59.85 0.64 2.13 15 19 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.06 1.30 7.55 -51.93 -0.39 0.91 15 22 H 0.36 7.70 5.75 -39.29 -0.23 7.48 15 23 H 0.32 5.27 9.08 -39.29 -0.36 4.91 15 24 H 0.27 6.97 8.30 -40.82 -0.34 6.63 15 25 H 0.14 3.98 6.47 -52.48 -0.34 3.64 15 26 H 0.13 2.58 8.06 -52.49 -0.42 2.16 15 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 28 H 0.06 0.97 7.09 -51.92 -0.37 0.60 15 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 LS Contribution 241.15 15.07 3.63 3.63 Total: -1.00 -30.46 241.15 -6.10 -36.56 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -3.58 Total: 12.47 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -1.32 Total: -17.32 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.18 Total: -50.57 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.46 -6.10 -36.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925107.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.470 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds