Wall clock time and date at job start Mon Mar 30 2020 01:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34848 * 125.88751 * 2 1 4 4 C 1.40893 * 107.41422 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.29336 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46953 * 19.99970 * 5 4 3 7 7 N 1.46899 * 109.47101 * 140.00138 * 5 4 3 8 8 C 1.50698 * 109.47294 * 260.00528 * 5 4 3 9 9 H 1.08005 * 119.99819 * 359.97438 * 8 5 4 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 5 4 11 11 N 1.31518 * 119.99944 * 359.97438 * 10 8 5 12 12 Si 1.86798 * 119.99979 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.47454 * 59.99696 * 12 10 8 14 14 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46926 * 299.99488 * 12 10 8 16 16 C 1.34845 * 107.41774 * 0.23097 * 4 3 2 17 17 N 1.36336 * 108.22021 * 359.63328 * 16 4 3 18 18 C 1.46499 * 125.63971 * 180.15009 * 17 16 4 19 19 H 1.09005 * 109.47091 * 89.97370 * 1 2 3 20 20 H 1.08996 * 109.46740 * 209.97678 * 1 2 3 21 21 H 1.09003 * 109.46943 * 329.97318 * 1 2 3 22 22 H 1.07995 * 126.29868 * 0.04467 * 3 2 1 23 23 H 1.00903 * 110.99644 * 296.04622 * 7 5 4 24 24 H 1.00897 * 110.99782 * 60.00139 * 7 5 4 25 25 H 0.96997 * 119.99752 * 180.02562 * 11 10 8 26 26 H 1.08002 * 125.89317 * 179.75069 * 16 4 3 27 27 H 1.09004 * 109.47068 * 270.25814 * 18 17 16 28 28 H 1.08998 * 109.47140 * 30.26059 * 18 17 16 29 29 H 1.09003 * 109.47712 * 150.26488 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6339 0.6461 -0.0006 5 6 4.8648 1.5155 -0.0014 6 1 4.6046 2.5139 0.3501 7 7 5.8773 0.9315 0.8884 8 6 5.4167 1.6037 -1.4009 9 1 4.9255 1.0819 -2.2089 10 6 6.5494 2.3495 -1.6496 11 7 7.1478 2.9844 -0.6655 12 14 7.2338 2.4582 -3.3842 13 1 6.2107 3.0487 -4.2841 14 1 8.4468 3.3151 -3.3850 15 1 7.5880 1.0977 -3.8627 16 6 3.6090 -0.7022 -0.0061 17 7 2.3064 -1.1045 -0.0007 18 6 1.8422 -2.4940 -0.0009 19 1 -0.3633 0.0005 -1.0277 20 1 -0.3632 -0.8902 0.5135 21 1 -0.3633 0.8898 0.5143 22 1 1.9671 2.1207 0.0007 23 1 5.5554 0.9210 1.8447 24 1 6.1355 0.0050 0.5835 25 1 7.9444 3.5094 -0.8405 26 1 4.4721 -1.3513 -0.0118 27 1 1.7266 -2.8384 -1.0286 28 1 2.5714 -3.1208 0.5125 29 1 0.8831 -2.5569 0.5133 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004604.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:05 Heat of formation + Delta-G solvation = 48.335142 kcal Electronic energy + Delta-G solvation = -12009.427868 eV Core-core repulsion = 9933.371487 eV Total energy + Delta-G solvation = -2076.056381 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.53353 -34.64081 -32.07095 -31.38429 -30.29127 -26.46668 -25.42602 -24.93814 -21.80750 -19.13378 -18.00659 -16.12374 -16.07236 -14.94395 -14.38853 -13.85256 -13.67314 -12.99703 -12.81463 -12.30076 -12.24748 -12.07548 -11.65793 -11.63676 -11.26308 -10.81312 -10.58581 -10.40464 -9.71312 -9.01407 -8.25605 -7.64154 -7.19185 -6.78116 -5.69496 -3.82084 2.87815 3.44777 3.48860 3.50528 3.52397 3.91821 4.64237 4.98107 5.27697 5.30939 5.42847 5.52407 5.55627 5.78633 5.88723 6.06442 6.37302 6.54226 6.60650 7.10179 7.15658 7.63437 7.88695 8.04294 8.08801 8.12042 8.47832 8.88057 9.23975 9.37893 9.84990 11.34832 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.049791 B = 0.009591 C = 0.009354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.212535 B = 2918.675032 C = 2992.741089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.190 4.190 4 C -0.144 4.144 5 C 0.281 3.719 6 H 0.040 0.960 7 N -0.809 5.809 8 C -0.521 4.521 9 H 0.050 0.950 10 C 0.080 3.920 11 N -0.852 5.852 12 Si 0.881 3.119 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.280 1.280 16 C -0.037 4.037 17 N -0.459 5.459 18 C 0.079 3.921 19 H 0.062 0.938 20 H 0.053 0.947 21 H 0.073 0.927 22 H 0.126 0.874 23 H 0.295 0.705 24 H 0.313 0.687 25 H 0.253 0.747 26 H 0.150 0.850 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 -8.586 2.058 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C -0.217 4.217 4 C -0.152 4.152 5 C 0.171 3.829 6 H 0.058 0.942 7 N -0.334 5.334 8 C -0.560 4.560 9 H 0.068 0.932 10 C -0.125 4.125 11 N -0.487 5.487 12 Si 0.709 3.291 13 H -0.205 1.205 14 H -0.215 1.215 15 H -0.206 1.206 16 C -0.164 4.164 17 N -0.138 5.138 18 C -0.063 4.063 19 H 0.080 0.920 20 H 0.071 0.929 21 H 0.092 0.908 22 H 0.144 0.856 23 H 0.105 0.895 24 H 0.124 0.876 25 H 0.063 0.937 26 H 0.168 0.832 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.028 -8.195 1.893 13.088 hybrid contribution -0.287 -0.807 -0.905 1.246 sum -10.315 -9.002 0.987 13.726 Atomic orbital electron populations 1.20174 0.89314 1.02037 1.01630 1.20162 0.92647 0.86436 1.13005 1.20655 0.93089 0.96821 1.11090 1.21404 0.97253 0.93645 1.02945 1.17564 0.81543 0.91083 0.92691 0.94205 1.59256 1.45462 1.25949 1.02729 1.20890 1.11287 1.31484 0.92353 0.93215 1.24965 0.96629 0.95175 0.95742 1.70105 1.18656 1.29839 1.30137 0.86881 0.78343 0.77770 0.86100 1.20529 1.21483 1.20572 1.21395 0.84746 0.95928 1.14309 1.43697 1.06185 1.04728 1.59161 1.21798 1.00791 0.81478 1.02239 0.91973 0.92853 0.90839 0.85568 0.89491 0.87641 0.93673 0.83212 0.91922 0.90597 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.10 36.01 0.36 -0.58 15 2 C -0.01 -0.22 6.89 -81.79 -0.56 -0.78 15 3 C -0.19 -3.99 10.71 -39.78 -0.43 -4.42 15 4 C -0.14 -3.31 5.07 -104.82 -0.53 -3.85 15 5 C 0.28 7.44 3.08 -70.01 -0.22 7.23 15 6 H 0.04 1.17 8.14 -51.93 -0.42 0.75 15 7 N -0.81 -20.04 8.44 -6.65 -0.06 -20.09 15 8 C -0.52 -15.12 8.71 -34.44 -0.30 -15.42 15 9 H 0.05 1.46 7.74 -52.48 -0.41 1.06 15 10 C 0.08 2.34 5.39 -17.82 -0.10 2.25 15 11 N -0.85 -25.81 12.77 55.43 0.71 -25.11 15 12 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 15 13 H -0.28 -6.98 7.11 56.52 0.40 -6.57 15 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 15 15 H -0.28 -6.98 7.11 56.52 0.40 -6.57 15 16 C -0.04 -0.74 10.80 -16.75 -0.18 -0.93 15 17 N -0.46 -7.90 3.15 -119.90 -0.38 -8.28 15 18 C 0.08 0.94 10.92 59.85 0.65 1.59 15 19 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.05 0.57 7.05 -51.93 -0.37 0.21 15 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.13 2.54 8.06 -52.49 -0.42 2.12 15 23 H 0.30 6.63 9.06 -39.29 -0.36 6.27 15 24 H 0.31 7.34 8.16 -39.29 -0.32 7.02 15 25 H 0.25 7.35 8.31 -40.82 -0.34 7.01 15 26 H 0.15 2.83 7.61 -52.49 -0.40 2.43 15 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 29 H 0.07 0.71 7.02 -51.93 -0.36 0.35 15 LS Contribution 250.60 15.07 3.78 3.78 Total: -1.00 -32.67 250.60 -6.15 -38.82 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -3.88 Total: 8.64 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.30 Total: -14.91 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.27 Total: -53.48 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.67 -6.15 -38.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004604.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.157 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds