Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35315 * 126.13139 * 2 1 4 4 C 1.39870 * 107.92205 * 179.72875 * 3 2 1 5 5 C 1.50696 * 125.89765 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47299 * 155.00285 * 5 4 3 7 7 C 1.53000 * 109.46983 * 35.00404 * 5 4 3 8 8 C 1.50696 * 109.47152 * 275.00290 * 5 4 3 9 9 H 1.08003 * 120.00420 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00045 * 180.02562 * 8 5 4 11 11 N 1.31521 * 119.99953 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 120.00379 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46762 * 89.99649 * 12 10 8 14 14 H 1.48494 * 109.47154 * 209.99937 * 12 10 8 15 15 H 1.48500 * 109.46937 * 330.00015 * 12 10 8 16 16 N 1.30839 * 108.19862 * 359.97438 * 4 3 2 17 17 N 1.34948 * 126.12278 * 179.67507 * 2 1 3 18 18 C 1.46502 * 126.03993 * 0.27478 * 17 2 1 19 19 H 1.09008 * 109.47026 * 90.02796 * 1 2 3 20 20 H 1.08994 * 109.47575 * 210.02567 * 1 2 3 21 21 H 1.08998 * 109.47063 * 330.03374 * 1 2 3 22 22 H 1.08001 * 126.03507 * 359.74559 * 3 2 1 23 23 H 1.09006 * 109.46950 * 299.99302 * 7 5 4 24 24 H 1.08999 * 109.47478 * 59.99793 * 7 5 4 25 25 H 1.09002 * 109.46711 * 179.97438 * 7 5 4 26 26 H 0.96999 * 119.99976 * 180.02562 * 11 10 8 27 27 H 1.09008 * 109.47064 * 89.99169 * 18 17 2 28 28 H 1.08998 * 109.47431 * 209.99518 * 18 17 2 29 29 H 1.08999 * 109.46741 * 329.99840 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6558 0.0063 5 6 4.8543 1.5393 0.0080 6 1 5.6931 0.9992 0.4471 7 6 4.5717 2.7982 0.8303 8 6 5.1938 1.9296 -1.4074 9 1 4.5866 1.5732 -2.2264 10 6 6.2803 2.7409 -1.6571 11 7 7.0201 3.1746 -0.6599 12 14 6.7017 3.2242 -3.4116 13 1 5.9955 4.4829 -3.7615 14 1 8.1676 3.4297 -3.5300 15 1 6.2768 2.1443 -4.3381 16 7 3.6332 -0.6526 0.0105 17 7 2.3025 -1.0900 0.0062 18 6 1.8538 -2.4846 0.0084 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8897 0.5142 21 1 -0.3633 0.8903 0.5133 22 1 1.9741 2.1210 -0.0039 23 1 3.7329 3.3383 0.3911 24 1 4.3261 2.5159 1.8541 25 1 5.4549 3.4370 0.8319 26 1 7.7843 3.7456 -0.8355 27 1 1.7463 -2.8334 -1.0188 28 1 2.5877 -3.1017 0.5267 29 1 0.8933 -2.5564 0.5188 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260017970.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = 63.962341 kcal Electronic energy + Delta-G solvation = -12013.505348 eV Core-core repulsion = 9938.126613 eV Total energy + Delta-G solvation = -2075.378734 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.44103 -34.68545 -32.44655 -31.45532 -30.03632 -26.45431 -25.60623 -25.00777 -21.80156 -19.29351 -18.32954 -16.23359 -15.76031 -15.02135 -14.56123 -13.58118 -13.35218 -12.99788 -12.76489 -12.44712 -12.07801 -11.95221 -11.47814 -11.31692 -10.86517 -10.66292 -10.31629 -10.11749 -9.76597 -9.46579 -9.04590 -8.28864 -8.09610 -7.67075 -5.93309 -3.98583 2.57610 3.20245 3.36094 3.41823 3.46582 3.81963 4.52281 4.97434 5.10912 5.29020 5.37803 5.39901 5.59687 5.67694 5.90646 5.97478 6.46352 6.64549 6.82815 6.97305 7.12561 7.27898 7.67462 7.73149 7.78690 7.96361 8.17086 8.46368 8.74595 9.02230 9.64516 11.12937 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.050053 B = 0.009616 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.274881 B = 2911.145011 C = 3005.789306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.055 3.945 3 C -0.259 4.259 4 C 0.127 3.873 5 C 0.111 3.889 6 H 0.040 0.960 7 C -0.129 4.129 8 C -0.499 4.499 9 H 0.055 0.945 10 C 0.062 3.938 11 N -0.891 5.891 12 Si 0.896 3.104 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.275 1.275 16 N -0.314 5.314 17 N -0.396 5.396 18 C 0.109 3.891 19 H 0.072 0.928 20 H 0.061 0.939 21 H 0.079 0.921 22 H 0.139 0.861 23 H 0.031 0.969 24 H 0.009 0.991 25 H 0.087 0.913 26 H 0.261 0.739 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.361 -5.739 1.656 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.289 4.289 4 C -0.040 4.040 5 C 0.090 3.910 6 H 0.058 0.942 7 C -0.187 4.187 8 C -0.538 4.538 9 H 0.073 0.927 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.723 3.277 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.200 1.200 16 N -0.135 5.135 17 N -0.178 5.178 18 C -0.033 4.033 19 H 0.090 0.910 20 H 0.080 0.920 21 H 0.098 0.902 22 H 0.157 0.843 23 H 0.050 0.950 24 H 0.028 0.972 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.551 -6.869 1.701 12.704 hybrid contribution -0.318 0.899 -1.028 1.402 sum -10.869 -5.970 0.673 12.419 Atomic orbital electron populations 1.20321 0.88440 1.02850 1.02505 1.20922 0.93892 0.88059 1.04279 1.21164 0.92506 0.98286 1.16936 1.23287 0.96959 0.90778 0.92933 1.17356 0.87087 0.89757 0.96765 0.94152 1.21746 1.02018 0.99804 0.95150 1.20967 1.11708 1.29773 0.91347 0.92702 1.24917 0.95927 0.95976 0.97105 1.69890 1.17722 1.35078 1.30369 0.86532 0.77396 0.78797 0.84926 1.20645 1.21210 1.20022 1.77414 0.94521 1.13678 1.27855 1.48401 1.04644 1.04941 1.59861 1.21578 1.00077 0.79340 1.02300 0.90975 0.92005 0.90211 0.84291 0.94998 0.97160 0.89414 0.92958 0.91814 0.89985 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.12 36.01 0.36 -0.63 15 2 C 0.05 0.98 6.93 -82.26 -0.57 0.41 15 3 C -0.26 -5.53 9.89 -40.01 -0.40 -5.93 15 4 C 0.13 3.14 6.06 -82.41 -0.50 2.64 15 5 C 0.11 3.00 2.76 -92.93 -0.26 2.75 15 6 H 0.04 1.19 8.14 -51.93 -0.42 0.77 15 7 C -0.13 -3.22 8.56 37.16 0.32 -2.90 15 8 C -0.50 -14.43 8.55 -34.44 -0.29 -14.73 15 9 H 0.05 1.62 7.74 -52.48 -0.41 1.21 15 10 C 0.06 1.75 5.30 -17.82 -0.09 1.66 15 11 N -0.89 -25.92 11.32 55.43 0.63 -25.29 15 12 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 15 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 14 H -0.29 -6.91 7.11 56.52 0.40 -6.50 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 N -0.31 -7.53 12.57 33.67 0.42 -7.11 15 17 N -0.40 -7.54 4.01 -63.88 -0.26 -7.79 15 18 C 0.11 1.42 11.28 59.85 0.67 2.09 15 19 H 0.07 0.79 8.14 -51.92 -0.42 0.36 15 20 H 0.06 0.60 7.07 -51.93 -0.37 0.24 15 21 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.14 2.77 7.43 -52.49 -0.39 2.38 15 23 H 0.03 0.75 7.30 -51.93 -0.38 0.37 15 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 15 25 H 0.09 2.36 6.07 -51.93 -0.32 2.05 15 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 27 H 0.06 0.74 8.14 -51.92 -0.42 0.32 15 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 29 H 0.08 0.73 7.04 -51.93 -0.37 0.36 15 LS Contribution 248.03 15.07 3.74 3.74 Total: -1.00 -32.52 248.03 -5.14 -37.65 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -3.89 Total: -3.45 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -0.75 Total: -14.64 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.79 Total: -40.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.52 -5.14 -37.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017970.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.616 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds