Wall clock time and date at job start Mon Mar 30 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35315 * 126.13139 * 2 1 4 4 C 1.39870 * 107.92205 * 179.72875 * 3 2 1 5 5 C 1.50696 * 125.89765 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47299 * 155.00285 * 5 4 3 7 7 C 1.53000 * 109.46983 * 35.00404 * 5 4 3 8 8 C 1.50696 * 109.47152 * 275.00290 * 5 4 3 9 9 H 1.08003 * 120.00420 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00045 * 180.02562 * 8 5 4 11 11 N 1.31521 * 119.99953 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 120.00379 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46762 * 89.99649 * 12 10 8 14 14 H 1.48494 * 109.47154 * 209.99937 * 12 10 8 15 15 H 1.48500 * 109.46937 * 330.00015 * 12 10 8 16 16 N 1.30839 * 108.19862 * 359.97438 * 4 3 2 17 17 N 1.34948 * 126.12278 * 179.67507 * 2 1 3 18 18 C 1.46502 * 126.03993 * 0.27478 * 17 2 1 19 19 H 1.09008 * 109.47026 * 90.02796 * 1 2 3 20 20 H 1.08994 * 109.47575 * 210.02567 * 1 2 3 21 21 H 1.08998 * 109.47063 * 330.03374 * 1 2 3 22 22 H 1.08001 * 126.03507 * 359.74559 * 3 2 1 23 23 H 1.09006 * 109.46950 * 299.99302 * 7 5 4 24 24 H 1.08999 * 109.47478 * 59.99793 * 7 5 4 25 25 H 1.09002 * 109.46711 * 179.97438 * 7 5 4 26 26 H 0.96999 * 119.99976 * 180.02562 * 11 10 8 27 27 H 1.09008 * 109.47064 * 89.99169 * 18 17 2 28 28 H 1.08998 * 109.47431 * 209.99518 * 18 17 2 29 29 H 1.08999 * 109.46741 * 329.99840 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6558 0.0063 5 6 4.8543 1.5393 0.0080 6 1 5.6931 0.9992 0.4471 7 6 4.5717 2.7982 0.8303 8 6 5.1938 1.9296 -1.4074 9 1 4.5866 1.5732 -2.2264 10 6 6.2803 2.7409 -1.6571 11 7 7.0201 3.1746 -0.6599 12 14 6.7017 3.2242 -3.4116 13 1 5.9955 4.4829 -3.7615 14 1 8.1676 3.4297 -3.5300 15 1 6.2768 2.1443 -4.3381 16 7 3.6332 -0.6526 0.0105 17 7 2.3025 -1.0900 0.0062 18 6 1.8538 -2.4846 0.0084 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8897 0.5142 21 1 -0.3633 0.8903 0.5133 22 1 1.9741 2.1210 -0.0039 23 1 3.7329 3.3383 0.3911 24 1 4.3261 2.5159 1.8541 25 1 5.4549 3.4370 0.8319 26 1 7.7843 3.7456 -0.8355 27 1 1.7463 -2.8334 -1.0188 28 1 2.5877 -3.1017 0.5267 29 1 0.8933 -2.5564 0.5188 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260017970.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:25 Heat of formation + Delta-G solvation = 42.425071 kcal Electronic energy + Delta-G solvation = -12014.439274 eV Core-core repulsion = 9938.126613 eV Total energy + Delta-G solvation = -2076.312660 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.00190 -36.62257 -34.20764 -32.74379 -31.94172 -27.81077 -27.14052 -27.00653 -23.70851 -20.80997 -20.03312 -18.33902 -17.30386 -16.56586 -16.36618 -15.08361 -14.92406 -14.67890 -13.90406 -13.82373 -13.50127 -13.33032 -13.14354 -12.82617 -12.78210 -12.56339 -12.27479 -12.14171 -11.73863 -11.26003 -11.08217 -10.46382 -9.76387 -9.22578 -8.10713 -6.25404 1.08810 1.41350 1.42749 1.53401 1.87439 2.07067 2.47063 3.15701 3.80864 3.91868 4.34107 4.41429 4.46132 4.66527 4.78713 4.81944 4.97485 5.03384 5.08548 5.12527 5.20918 5.37287 5.55605 5.84809 5.88499 6.07021 6.31236 6.41918 6.79174 7.06300 7.41540 8.94628 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.050053 B = 0.009616 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.274881 B = 2911.145011 C = 3005.789306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.080 3.920 3 C -0.296 4.296 4 C 0.096 3.904 5 C 0.110 3.890 6 H -0.003 1.003 7 C -0.113 4.113 8 C -0.521 4.521 9 H 0.041 0.959 10 C 0.017 3.983 11 N -0.915 5.915 12 Si 0.963 3.037 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.276 1.276 16 N -0.361 5.361 17 N -0.391 5.391 18 C 0.095 3.905 19 H 0.091 0.909 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.144 0.856 23 H 0.040 0.960 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.265 0.735 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.753 -6.362 1.010 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C -0.325 4.325 4 C -0.069 4.069 5 C 0.090 3.910 6 H 0.015 0.985 7 C -0.171 4.171 8 C -0.560 4.560 9 H 0.059 0.941 10 C -0.182 4.182 11 N -0.554 5.554 12 Si 0.787 3.213 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.202 1.202 16 N -0.183 5.183 17 N -0.173 5.173 18 C -0.045 4.045 19 H 0.109 0.891 20 H 0.113 0.887 21 H 0.114 0.886 22 H 0.162 0.838 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.943 -7.505 1.065 14.999 hybrid contribution 0.352 0.957 -0.791 1.291 sum -12.592 -6.548 0.273 14.195 Atomic orbital electron populations 1.20555 0.83460 1.05293 1.04424 1.21738 0.96516 0.86452 1.00140 1.21295 0.91569 0.99854 1.19811 1.22960 0.97443 0.91257 0.95230 1.17153 0.87304 0.90609 0.95955 0.98456 1.21534 1.01153 0.98646 0.95816 1.21134 1.12367 1.30600 0.91926 0.94104 1.25720 0.95517 0.95623 1.01376 1.70010 1.17924 1.35160 1.32349 0.85495 0.77500 0.78642 0.79633 1.19251 1.20301 1.20152 1.77246 0.98123 1.13533 1.29441 1.48819 1.03168 1.07410 1.57951 1.22100 1.02074 0.76149 1.04139 0.89057 0.88746 0.88648 0.83836 0.94088 0.95680 0.91651 0.92585 0.90144 0.89847 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.12 71.24 0.72 -0.80 15 2 C 0.08 2.68 6.93 41.40 0.29 2.97 15 3 C -0.30 -12.55 9.89 21.99 0.22 -12.34 15 4 C 0.10 4.89 6.06 43.10 0.26 5.15 15 5 C 0.11 6.27 2.76 -12.29 -0.03 6.24 15 6 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 15 7 C -0.11 -5.85 8.56 71.98 0.62 -5.24 15 8 C -0.52 -31.28 8.55 25.60 0.22 -31.06 15 9 H 0.04 2.49 7.74 -2.91 -0.02 2.47 15 10 C 0.02 0.96 5.30 84.65 0.45 1.41 15 11 N -0.92 -54.52 11.32 21.45 0.24 -54.28 15 12 Si 0.96 45.42 29.54 68.60 2.03 47.45 15 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 16 N -0.36 -17.63 12.57 -47.39 -0.60 -18.23 15 17 N -0.39 -14.17 4.01 -356.02 -1.43 -15.60 15 18 C 0.10 2.14 11.28 127.77 1.44 3.58 15 19 H 0.09 1.51 8.14 -2.38 -0.02 1.49 15 20 H 0.09 1.24 7.07 -2.39 -0.02 1.23 15 21 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.14 5.71 7.43 -2.91 -0.02 5.69 15 23 H 0.04 1.98 7.30 -2.38 -0.02 1.96 15 24 H 0.02 1.16 8.14 -2.39 -0.02 1.14 15 25 H 0.06 3.65 6.07 -2.39 -0.01 3.63 15 26 H 0.26 14.79 8.31 -92.71 -0.77 14.02 15 27 H 0.08 1.59 8.14 -2.38 -0.02 1.57 15 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 29 H 0.12 1.65 7.04 -2.39 -0.02 1.64 15 Total: -1.00 -73.74 248.03 5.55 -68.20 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.12 Total: 2.56 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 4.18 Total: -30.09 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -1.78 Total: -88.11 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -73.74 5.55 -68.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017970.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.622 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds